miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27202 3' -58.7 NC_005832.1 + 55657 0.66 0.74
Target:  5'- cCGUGGGGAcUgggacuccugcuauaGGCACCGGGUCU--CCg -3'
miRNA:   3'- aGCGUCCCU-G---------------CCGUGGUCCGGAauGG- -5'
27202 3' -58.7 NC_005832.1 + 10947 0.66 0.736078
Target:  5'- gUGCuGGGA-GGCACC-GGCaugACCc -3'
miRNA:   3'- aGCGuCCCUgCCGUGGuCCGgaaUGG- -5'
27202 3' -58.7 NC_005832.1 + 75935 0.66 0.726209
Target:  5'- ---gAGGGGagaGGCACCGGaCCUaACCg -3'
miRNA:   3'- agcgUCCCUg--CCGUGGUCcGGAaUGG- -5'
27202 3' -58.7 NC_005832.1 + 31944 0.66 0.725218
Target:  5'- -aGaCAGGGGauggGGCGCCcaccgcgAGGCCUUucagGCCc -3'
miRNA:   3'- agC-GUCCCUg---CCGUGG-------UCCGGAA----UGG- -5'
27202 3' -58.7 NC_005832.1 + 42235 0.66 0.722239
Target:  5'- aCGCAGGGuuGGUcguaGgCGGGCCUgaugugaggcacaACCa -3'
miRNA:   3'- aGCGUCCCugCCG----UgGUCCGGAa------------UGG- -5'
27202 3' -58.7 NC_005832.1 + 55993 0.66 0.720249
Target:  5'- aCaCGGGGcccgcguagccguacGCGGCcCUGGGUCUUGCCc -3'
miRNA:   3'- aGcGUCCC---------------UGCCGuGGUCCGGAAUGG- -5'
27202 3' -58.7 NC_005832.1 + 52189 0.66 0.716259
Target:  5'- aCGUAGGGucugGGgACCAGGagCUUGCa -3'
miRNA:   3'- aGCGUCCCug--CCgUGGUCCg-GAAUGg -5'
27202 3' -58.7 NC_005832.1 + 17023 0.66 0.716259
Target:  5'- gUUGUAGGGGagggagacaacUGGCaggGCCAGGCC--GCUg -3'
miRNA:   3'- -AGCGUCCCU-----------GCCG---UGGUCCGGaaUGG- -5'
27202 3' -58.7 NC_005832.1 + 10787 0.66 0.716259
Target:  5'- -gGUGGGGAuCGGCugCggAGGCCaggaACCc -3'
miRNA:   3'- agCGUCCCU-GCCGugG--UCCGGaa--UGG- -5'
27202 3' -58.7 NC_005832.1 + 21103 0.66 0.706237
Target:  5'- cCGUAGGGAC-GC-CCcGGCCgu-CCu -3'
miRNA:   3'- aGCGUCCCUGcCGuGGuCCGGaauGG- -5'
27202 3' -58.7 NC_005832.1 + 30294 0.66 0.696151
Target:  5'- cUCGCAGGGGaGcGCACCGcaaGCCUcuuguucugACCa -3'
miRNA:   3'- -AGCGUCCCUgC-CGUGGUc--CGGAa--------UGG- -5'
27202 3' -58.7 NC_005832.1 + 88550 0.66 0.686011
Target:  5'- aUCGCuagccuaauuacGGGGAUGGCuAUCAGGg--UGCCg -3'
miRNA:   3'- -AGCG------------UCCCUGCCG-UGGUCCggaAUGG- -5'
27202 3' -58.7 NC_005832.1 + 74598 0.67 0.665605
Target:  5'- uUUGaCAGGGguaucuugACGGCGuCCAGGCCcgucaggUACUu -3'
miRNA:   3'- -AGC-GUCCC--------UGCCGU-GGUCCGGa------AUGG- -5'
27202 3' -58.7 NC_005832.1 + 81144 0.67 0.665605
Target:  5'- gUCGUagacugggaacGGGGccuuGCGGUGCCGuGGCCccUGCCa -3'
miRNA:   3'- -AGCG-----------UCCC----UGCCGUGGU-CCGGa-AUGG- -5'
27202 3' -58.7 NC_005832.1 + 97343 0.67 0.655357
Target:  5'- -gGCAGGacACGGC-CgAGGCCUgcuCCa -3'
miRNA:   3'- agCGUCCc-UGCCGuGgUCCGGAau-GG- -5'
27202 3' -58.7 NC_005832.1 + 48451 0.67 0.64509
Target:  5'- aCGCGa-GACGGCGucaugUCAGGCCgugACCa -3'
miRNA:   3'- aGCGUccCUGCCGU-----GGUCCGGaa-UGG- -5'
27202 3' -58.7 NC_005832.1 + 35235 0.67 0.634813
Target:  5'- uUUGCGGGaGACGGCAagaGGGUCgacgACUc -3'
miRNA:   3'- -AGCGUCC-CUGCCGUgg-UCCGGaa--UGG- -5'
27202 3' -58.7 NC_005832.1 + 5202 0.67 0.634813
Target:  5'- -aGCAGGGAggcaggacCGGCAuCCuGGUCaugACCa -3'
miRNA:   3'- agCGUCCCU--------GCCGU-GGuCCGGaa-UGG- -5'
27202 3' -58.7 NC_005832.1 + 56745 0.67 0.624534
Target:  5'- aCGUAGGcGuACuGCGCCAGGUUUagGCCa -3'
miRNA:   3'- aGCGUCC-C-UGcCGUGGUCCGGAa-UGG- -5'
27202 3' -58.7 NC_005832.1 + 79286 0.67 0.624534
Target:  5'- gUCGcCAGGGA-GGCcgcuccacCCAGGCCUc-CCa -3'
miRNA:   3'- -AGC-GUCCCUgCCGu-------GGUCCGGAauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.