miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27202 5' -59.9 NC_005832.1 + 19725 0.66 0.634646
Target:  5'- uGCGGCGGGuuucccucuuacGGCGGGuCGUC-CUCCu-- -3'
miRNA:   3'- -UGCCGUUC------------CCGUCC-GCAGaGAGGcuu -5'
27202 5' -59.9 NC_005832.1 + 54647 0.66 0.613935
Target:  5'- uCGGCcAGGGC-GGCGUCccucuugggguUCUCgGAc -3'
miRNA:   3'- uGCCGuUCCCGuCCGCAG-----------AGAGgCUu -5'
27202 5' -59.9 NC_005832.1 + 9533 0.66 0.611866
Target:  5'- gAUGGCAgucgcuaccuccuGGGGCAuGGCacucgccGUCUCUCCu-- -3'
miRNA:   3'- -UGCCGU-------------UCCCGU-CCG-------CAGAGAGGcuu -5'
27202 5' -59.9 NC_005832.1 + 10429 0.66 0.603597
Target:  5'- cGCGGUGAGGa-GGGCGaaccUCUUUCCGGGa -3'
miRNA:   3'- -UGCCGUUCCcgUCCGC----AGAGAGGCUU- -5'
27202 5' -59.9 NC_005832.1 + 31160 0.66 0.59328
Target:  5'- gGCGGCuggaAGGaGGguGGUGcCUgCUCCGAGc -3'
miRNA:   3'- -UGCCG----UUC-CCguCCGCaGA-GAGGCUU- -5'
27202 5' -59.9 NC_005832.1 + 96547 0.68 0.502536
Target:  5'- uGCGGCGGGGGCAGaGUaggauccggCUCUCaCGGu -3'
miRNA:   3'- -UGCCGUUCCCGUC-CGca-------GAGAG-GCUu -5'
27202 5' -59.9 NC_005832.1 + 74566 0.69 0.409551
Target:  5'- uACGGCAuccAGGGCAaacacGGCGUg-UUCCGAGu -3'
miRNA:   3'- -UGCCGU---UCCCGU-----CCGCAgaGAGGCUU- -5'
27202 5' -59.9 NC_005832.1 + 5514 0.71 0.328047
Target:  5'- -aGGCGaugaugagggAGGGCAGG-GUCUCUUCGGu -3'
miRNA:   3'- ugCCGU----------UCCCGUCCgCAGAGAGGCUu -5'
27202 5' -59.9 NC_005832.1 + 43698 0.71 0.320589
Target:  5'- gGCGG-GAGGGUcGGCGUaCUCUCCGu- -3'
miRNA:   3'- -UGCCgUUCCCGuCCGCA-GAGAGGCuu -5'
27202 5' -59.9 NC_005832.1 + 65440 1.05 0.001384
Target:  5'- uACGGCAAGGGCAGGCGUCUCUCCGAAc -3'
miRNA:   3'- -UGCCGUUCCCGUCCGCAGAGAGGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.