miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27203 5' -58.5 NC_005832.1 + 4265 0.66 0.761007
Target:  5'- cCCU-CGCGUCCUCGc---GGGCCUUGu -3'
miRNA:   3'- -GGAuGUGCAGGAGCccguCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 90405 0.66 0.761007
Target:  5'- uCCUcgACAgcuUGUCCUCGGGCcucccgucccucAGGcACCCc- -3'
miRNA:   3'- -GGA--UGU---GCAGGAGCCCG------------UCC-UGGGac -5'
27203 5' -58.5 NC_005832.1 + 50683 0.66 0.761007
Target:  5'- gUCUcaGCgGCGUCaaggCGGGCgagAGGAUCCUGa -3'
miRNA:   3'- -GGA--UG-UGCAGga--GCCCG---UCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 88307 0.66 0.755287
Target:  5'- gCCUG-ACuUCCUCGGGgaugucuggaaggucCAGGAgCCUGg -3'
miRNA:   3'- -GGAUgUGcAGGAGCCC---------------GUCCUgGGAC- -5'
27203 5' -58.5 NC_005832.1 + 37382 0.66 0.751452
Target:  5'- aCC-ACAUGcCCUCGggagugggaGGCAGGACCa-- -3'
miRNA:   3'- -GGaUGUGCaGGAGC---------CCGUCCUGGgac -5'
27203 5' -58.5 NC_005832.1 + 28091 0.66 0.749528
Target:  5'- aUUGCGCGacgaccaggccgUCUCcGGCGGGACCCUu -3'
miRNA:   3'- gGAUGUGCa-----------GGAGcCCGUCCUGGGAc -5'
27203 5' -58.5 NC_005832.1 + 54629 0.66 0.741792
Target:  5'- cUCUugGgGUUCUCGGaCuGGGCCUUGa -3'
miRNA:   3'- -GGAugUgCAGGAGCCcGuCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 105464 0.66 0.741792
Target:  5'- uUUACACGgaCCUCGGGU-GGAaauuuacccCCCUGu -3'
miRNA:   3'- gGAUGUGCa-GGAGCCCGuCCU---------GGGAC- -5'
27203 5' -58.5 NC_005832.1 + 47676 0.66 0.732037
Target:  5'- --aGCugGUCCUCuucGGCcuuuGGGGCCCa- -3'
miRNA:   3'- ggaUGugCAGGAGc--CCG----UCCUGGGac -5'
27203 5' -58.5 NC_005832.1 + 44632 0.67 0.708291
Target:  5'- aCUGCugggacaGCGUCCUcuacucgggcucgaCGGGCAGGAggcucCCCa- -3'
miRNA:   3'- gGAUG-------UGCAGGA--------------GCCCGUCCU-----GGGac -5'
27203 5' -58.5 NC_005832.1 + 52898 0.67 0.672016
Target:  5'- -gUGCACGUCgCUCcuGGCccucAGGAUCCUGc -3'
miRNA:   3'- ggAUGUGCAG-GAGc-CCG----UCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 62293 0.67 0.672016
Target:  5'- gCCU-CugGUCCUCGGGa---GCCUUGg -3'
miRNA:   3'- -GGAuGugCAGGAGCCCguccUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 94788 0.68 0.645532
Target:  5'- gCCgACGCGgCCugaucgggagaacugUCGGG-AGGACCCUGu -3'
miRNA:   3'- -GGaUGUGCaGG---------------AGCCCgUCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 65723 0.68 0.641448
Target:  5'- gUCUugACGaaucUCCccccggCGGGCAGGGUCCUGc -3'
miRNA:   3'- -GGAugUGC----AGGa-----GCCCGUCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 81399 0.68 0.621018
Target:  5'- -gUGCGCGagUCUgGGGaCGGGACUCUGa -3'
miRNA:   3'- ggAUGUGCa-GGAgCCC-GUCCUGGGAC- -5'
27203 5' -58.5 NC_005832.1 + 39674 0.68 0.600622
Target:  5'- uCCcACugGUCCcgCGGGUccucccGGACCCUu -3'
miRNA:   3'- -GGaUGugCAGGa-GCCCGu-----CCUGGGAc -5'
27203 5' -58.5 NC_005832.1 + 78878 0.69 0.580319
Target:  5'- -gUACAUGUCCUUgagGGGCuuGGugUCUGg -3'
miRNA:   3'- ggAUGUGCAGGAG---CCCGu-CCugGGAC- -5'
27203 5' -58.5 NC_005832.1 + 18175 0.69 0.540206
Target:  5'- aCUGC-UGUCCUUGaGCAGGACgCUGc -3'
miRNA:   3'- gGAUGuGCAGGAGCcCGUCCUGgGAC- -5'
27203 5' -58.5 NC_005832.1 + 94668 0.7 0.530317
Target:  5'- aCCUuccaGUagCCUcCGGGCGGGACCCUc -3'
miRNA:   3'- -GGAugugCA--GGA-GCCCGUCCUGGGAc -5'
27203 5' -58.5 NC_005832.1 + 9609 0.7 0.530317
Target:  5'- uCCUcCACaUCCUgGGGCAGGcuguCCCUc -3'
miRNA:   3'- -GGAuGUGcAGGAgCCCGUCCu---GGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.