miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27204 3' -59.2 NC_005832.1 + 32772 0.66 0.689912
Target:  5'- cGUCCuucccUUCAGGCCCGAgaCCaGGCa -3'
miRNA:   3'- aUAGGuac--AGGUCCGGGCU--GGaCCGc -5'
27204 3' -59.2 NC_005832.1 + 32679 0.66 0.689912
Target:  5'- cGUCCuucccUUCAGGCCCGAgaCCaGGCa -3'
miRNA:   3'- aUAGGuac--AGGUCCGGGCU--GGaCCGc -5'
27204 3' -59.2 NC_005832.1 + 67040 0.66 0.67968
Target:  5'- --gCCGUGgcgagggCCgcgggcguaaagAGGCCUGACCUGGaCGc -3'
miRNA:   3'- auaGGUACa------GG------------UCCGGGCUGGACC-GC- -5'
27204 3' -59.2 NC_005832.1 + 41402 0.66 0.67968
Target:  5'- -cUCCAUGUCCAGGggcaUGACUaccgagGGCGc -3'
miRNA:   3'- auAGGUACAGGUCCgg--GCUGGa-----CCGC- -5'
27204 3' -59.2 NC_005832.1 + 96623 0.66 0.669407
Target:  5'- aGUCCAgGUCCcuGgCUGACCUGGaCa -3'
miRNA:   3'- aUAGGUaCAGGucCgGGCUGGACC-Gc -5'
27204 3' -59.2 NC_005832.1 + 65872 0.66 0.659103
Target:  5'- cGUCCg---CCAGGUCgGGCCUGGaCa -3'
miRNA:   3'- aUAGGuacaGGUCCGGgCUGGACC-Gc -5'
27204 3' -59.2 NC_005832.1 + 42644 0.67 0.628094
Target:  5'- gGUCCucuUCCacagAGGCCCGAUC-GGCGu -3'
miRNA:   3'- aUAGGuacAGG----UCCGGGCUGGaCCGC- -5'
27204 3' -59.2 NC_005832.1 + 97225 0.67 0.617752
Target:  5'- --gCCGUGUCCugccuacuGGCCaaaaagaaCGACCUGGaCGc -3'
miRNA:   3'- auaGGUACAGGu-------CCGG--------GCUGGACC-GC- -5'
27204 3' -59.2 NC_005832.1 + 75127 0.67 0.586826
Target:  5'- ----gAUGggCAGGCCCGACCcGGUGa -3'
miRNA:   3'- auaggUACagGUCCGGGCUGGaCCGC- -5'
27204 3' -59.2 NC_005832.1 + 66831 0.67 0.576575
Target:  5'- gGUCCccaaacacgGUCCcGGCCgCGGCCUGGg- -3'
miRNA:   3'- aUAGGua-------CAGGuCCGG-GCUGGACCgc -5'
27204 3' -59.2 NC_005832.1 + 39279 0.68 0.546089
Target:  5'- uUGUCCGUGUCguccaggggaUGGGCggGAUCUGGCGg -3'
miRNA:   3'- -AUAGGUACAG----------GUCCGggCUGGACCGC- -5'
27204 3' -59.2 NC_005832.1 + 97295 0.68 0.526053
Target:  5'- cGUCCAgggaGUCCAGGCUCuuuGCCacGGCGu -3'
miRNA:   3'- aUAGGUa---CAGGUCCGGGc--UGGa-CCGC- -5'
27204 3' -59.2 NC_005832.1 + 1781 0.71 0.395694
Target:  5'- cUGUCCAUGgCCAGGCCCcuCUUGGg- -3'
miRNA:   3'- -AUAGGUACaGGUCCGGGcuGGACCgc -5'
27204 3' -59.2 NC_005832.1 + 56479 0.71 0.387196
Target:  5'- ------gGUCCAGGCCCGAggcCUUGGCa -3'
miRNA:   3'- auagguaCAGGUCCGGGCU---GGACCGc -5'
27204 3' -59.2 NC_005832.1 + 103579 0.71 0.378818
Target:  5'- aGUCCAUGUCCAuGGCC-GAUCUcaugGGCu -3'
miRNA:   3'- aUAGGUACAGGU-CCGGgCUGGA----CCGc -5'
27204 3' -59.2 NC_005832.1 + 40951 0.72 0.338788
Target:  5'- ----gGUGgcucCCAGGUCCGGCCUGGCc -3'
miRNA:   3'- auaggUACa---GGUCCGGGCUGGACCGc -5'
27204 3' -59.2 NC_005832.1 + 29231 0.74 0.261858
Target:  5'- aGUCCGUaugaggacggGUUCGGcGCCCGGCCUGGgGu -3'
miRNA:   3'- aUAGGUA----------CAGGUC-CGGGCUGGACCgC- -5'
27204 3' -59.2 NC_005832.1 + 40816 0.74 0.243503
Target:  5'- -uUCCAgggCCAGGCCgGACCUGGg- -3'
miRNA:   3'- auAGGUacaGGUCCGGgCUGGACCgc -5'
27204 3' -59.2 NC_005832.1 + 756 0.78 0.14325
Target:  5'- gUGUCCAUGUUCGGcgagucuCCCGGCCUGGCc -3'
miRNA:   3'- -AUAGGUACAGGUCc------GGGCUGGACCGc -5'
27204 3' -59.2 NC_005832.1 + 65737 1.08 0.001065
Target:  5'- aUAUCCAUGUCCAGGCCCGACCUGGCGg -3'
miRNA:   3'- -AUAGGUACAGGUCCGGGCUGGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.