miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27204 5' -56 NC_005832.1 + 15186 0.66 0.825593
Target:  5'- uGUCAuCCA-----GACCUGAGGCUCAGa -3'
miRNA:   3'- -UAGU-GGUucaccUUGGACUCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 91155 0.66 0.824711
Target:  5'- uUCACCGAG-GGcacCCUGGucuaccuGGCCCAa -3'
miRNA:   3'- uAGUGGUUCaCCuu-GGACU-------CCGGGUc -5'
27204 5' -56 NC_005832.1 + 79038 0.66 0.816688
Target:  5'- -cCACCAGG-GGucuACCUcuuAGGUCCAGg -3'
miRNA:   3'- uaGUGGUUCaCCu--UGGAc--UCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 48087 0.66 0.816688
Target:  5'- -cCACCcgcAAGUGGGAaggucCCUGAGGCUg-- -3'
miRNA:   3'- uaGUGG---UUCACCUU-----GGACUCCGGguc -5'
27204 5' -56 NC_005832.1 + 31324 0.66 0.807602
Target:  5'- cUC-CCAuguccAGUaGGAuCCUGGGGCUCGGa -3'
miRNA:   3'- uAGuGGU-----UCA-CCUuGGACUCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 39355 0.66 0.798344
Target:  5'- --gACCAGG-GGc-CCaGGGGCCCAGg -3'
miRNA:   3'- uagUGGUUCaCCuuGGaCUCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 91189 0.66 0.788923
Target:  5'- --gACCAucUGGAACaaccagaUGAGGCCCAa -3'
miRNA:   3'- uagUGGUucACCUUGg------ACUCCGGGUc -5'
27204 5' -56 NC_005832.1 + 40822 0.67 0.773537
Target:  5'- --gGCCAGGccGGAccugggagccacccuGCCguaGAGGCCCGGg -3'
miRNA:   3'- uagUGGUUCa-CCU---------------UGGa--CUCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 7227 0.67 0.739732
Target:  5'- gGUCACCGccgGGGACCUGAGaCCUg- -3'
miRNA:   3'- -UAGUGGUucaCCUUGGACUCcGGGuc -5'
27204 5' -56 NC_005832.1 + 43986 0.67 0.729548
Target:  5'- cUCcCCGAcUGGGGCCUGAGGaaCAGa -3'
miRNA:   3'- uAGuGGUUcACCUUGGACUCCggGUC- -5'
27204 5' -56 NC_005832.1 + 87239 0.68 0.698491
Target:  5'- cUCACCc--UGGAgaGCCUGAGGgCCAu -3'
miRNA:   3'- uAGUGGuucACCU--UGGACUCCgGGUc -5'
27204 5' -56 NC_005832.1 + 72537 0.68 0.698491
Target:  5'- aGUCcCCGGGUGGAcCCgGGGGUCCc- -3'
miRNA:   3'- -UAGuGGUUCACCUuGGaCUCCGGGuc -5'
27204 5' -56 NC_005832.1 + 79684 0.68 0.666892
Target:  5'- --gAgCAGGuUGGc-CCUGAGGCCCGGg -3'
miRNA:   3'- uagUgGUUC-ACCuuGGACUCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 97269 0.69 0.656285
Target:  5'- aGUCGCCAGccUGGccGGCCUcGAGGCCCuGg -3'
miRNA:   3'- -UAGUGGUUc-ACC--UUGGA-CUCCGGGuC- -5'
27204 5' -56 NC_005832.1 + 19716 0.69 0.624375
Target:  5'- --gGCCAAGaccgucaggGGGACCgucAGGCCCAGg -3'
miRNA:   3'- uagUGGUUCa--------CCUUGGac-UCCGGGUC- -5'
27204 5' -56 NC_005832.1 + 1454 0.69 0.613739
Target:  5'- --gACCAAGaggGGGGCCUGuGGCUgGGg -3'
miRNA:   3'- uagUGGUUCa--CCUUGGACuCCGGgUC- -5'
27204 5' -56 NC_005832.1 + 72830 0.73 0.431707
Target:  5'- -gUACCAGGUcaacagggucuGGGGCCUGAgcgcccucagGGCCCAGa -3'
miRNA:   3'- uaGUGGUUCA-----------CCUUGGACU----------CCGGGUC- -5'
27204 5' -56 NC_005832.1 + 53043 0.75 0.329255
Target:  5'- gGUCGCCGGcaGGAuCCUGAGGgCCAGg -3'
miRNA:   3'- -UAGUGGUUcaCCUuGGACUCCgGGUC- -5'
27204 5' -56 NC_005832.1 + 845 0.76 0.271563
Target:  5'- -gCGCCGAGUGGGACUcgaggGGGGCCCc- -3'
miRNA:   3'- uaGUGGUUCACCUUGGa----CUCCGGGuc -5'
27204 5' -56 NC_005832.1 + 54526 0.78 0.216685
Target:  5'- -cCACCucGUGGGGCCUGGGGCCg-- -3'
miRNA:   3'- uaGUGGuuCACCUUGGACUCCGGguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.