Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27204 | 5' | -56 | NC_005832.1 | + | 65772 | 1.07 | 0.002122 |
Target: 5'- cAUCACCAAGUGGAACCUGAGGCCCAGa -3' miRNA: 3'- -UAGUGGUUCACCUUGGACUCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 54526 | 0.78 | 0.216685 |
Target: 5'- -cCACCucGUGGGGCCUGGGGCCg-- -3' miRNA: 3'- uaGUGGuuCACCUUGGACUCCGGguc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 845 | 0.76 | 0.271563 |
Target: 5'- -gCGCCGAGUGGGACUcgaggGGGGCCCc- -3' miRNA: 3'- uaGUGGUUCACCUUGGa----CUCCGGGuc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 53043 | 0.75 | 0.329255 |
Target: 5'- gGUCGCCGGcaGGAuCCUGAGGgCCAGg -3' miRNA: 3'- -UAGUGGUUcaCCUuGGACUCCgGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 72830 | 0.73 | 0.431707 |
Target: 5'- -gUACCAGGUcaacagggucuGGGGCCUGAgcgcccucagGGCCCAGa -3' miRNA: 3'- uaGUGGUUCA-----------CCUUGGACU----------CCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 1454 | 0.69 | 0.613739 |
Target: 5'- --gACCAAGaggGGGGCCUGuGGCUgGGg -3' miRNA: 3'- uagUGGUUCa--CCUUGGACuCCGGgUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 19716 | 0.69 | 0.624375 |
Target: 5'- --gGCCAAGaccgucaggGGGACCgucAGGCCCAGg -3' miRNA: 3'- uagUGGUUCa--------CCUUGGac-UCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 97269 | 0.69 | 0.656285 |
Target: 5'- aGUCGCCAGccUGGccGGCCUcGAGGCCCuGg -3' miRNA: 3'- -UAGUGGUUc-ACC--UUGGA-CUCCGGGuC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 79684 | 0.68 | 0.666892 |
Target: 5'- --gAgCAGGuUGGc-CCUGAGGCCCGGg -3' miRNA: 3'- uagUgGUUC-ACCuuGGACUCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 87239 | 0.68 | 0.698491 |
Target: 5'- cUCACCc--UGGAgaGCCUGAGGgCCAu -3' miRNA: 3'- uAGUGGuucACCU--UGGACUCCgGGUc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 72537 | 0.68 | 0.698491 |
Target: 5'- aGUCcCCGGGUGGAcCCgGGGGUCCc- -3' miRNA: 3'- -UAGuGGUUCACCUuGGaCUCCGGGuc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 43986 | 0.67 | 0.729548 |
Target: 5'- cUCcCCGAcUGGGGCCUGAGGaaCAGa -3' miRNA: 3'- uAGuGGUUcACCUUGGACUCCggGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 7227 | 0.67 | 0.739732 |
Target: 5'- gGUCACCGccgGGGACCUGAGaCCUg- -3' miRNA: 3'- -UAGUGGUucaCCUUGGACUCcGGGuc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 40822 | 0.67 | 0.773537 |
Target: 5'- --gGCCAGGccGGAccugggagccacccuGCCguaGAGGCCCGGg -3' miRNA: 3'- uagUGGUUCa-CCU---------------UGGa--CUCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 91189 | 0.66 | 0.788923 |
Target: 5'- --gACCAucUGGAACaaccagaUGAGGCCCAa -3' miRNA: 3'- uagUGGUucACCUUGg------ACUCCGGGUc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 39355 | 0.66 | 0.798344 |
Target: 5'- --gACCAGG-GGc-CCaGGGGCCCAGg -3' miRNA: 3'- uagUGGUUCaCCuuGGaCUCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 31324 | 0.66 | 0.807602 |
Target: 5'- cUC-CCAuguccAGUaGGAuCCUGGGGCUCGGa -3' miRNA: 3'- uAGuGGU-----UCA-CCUuGGACUCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 48087 | 0.66 | 0.816688 |
Target: 5'- -cCACCcgcAAGUGGGAaggucCCUGAGGCUg-- -3' miRNA: 3'- uaGUGG---UUCACCUU-----GGACUCCGGguc -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 79038 | 0.66 | 0.816688 |
Target: 5'- -cCACCAGG-GGucuACCUcuuAGGUCCAGg -3' miRNA: 3'- uaGUGGUUCaCCu--UGGAc--UCCGGGUC- -5' |
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27204 | 5' | -56 | NC_005832.1 | + | 91155 | 0.66 | 0.824711 |
Target: 5'- uUCACCGAG-GGcacCCUGGucuaccuGGCCCAa -3' miRNA: 3'- uAGUGGUUCaCCuu-GGACU-------CCGGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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