miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27205 3' -58.5 NC_005832.1 + 94754 0.66 0.726736
Target:  5'- gAGGGacuGCAGGcccAGGAGGaUCUgcgcGAGGGCc -3'
miRNA:   3'- -UCCC---UGUCCu--UUCUCC-GGGa---CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 56535 0.66 0.726736
Target:  5'- uGGGAguGGGGuuccuGGCCggcagGAGGGCc -3'
miRNA:   3'- uCCCUguCCUUucu--CCGGga---CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 32733 0.66 0.726736
Target:  5'- cGGGGAgAGGcuGGAGGUgUCUGcGGGa -3'
miRNA:   3'- -UCCCUgUCCuuUCUCCG-GGACuCCCg -5'
27205 3' -58.5 NC_005832.1 + 32035 0.66 0.716713
Target:  5'- aAGGGA-GGGucAGccGUCCUGAGGGa -3'
miRNA:   3'- -UCCCUgUCCuuUCucCGGGACUCCCg -5'
27205 3' -58.5 NC_005832.1 + 72994 0.66 0.716713
Target:  5'- uGGGAaaaGGGGAgacAGAGGCCCcaaaGGCc -3'
miRNA:   3'- uCCCUg--UCCUU---UCUCCGGGacucCCG- -5'
27205 3' -58.5 NC_005832.1 + 8255 0.66 0.696454
Target:  5'- uAGGGACuccucGAAGGccGCCCUGcucaGGGGUc -3'
miRNA:   3'- -UCCCUGuc---CUUUCucCGGGAC----UCCCG- -5'
27205 3' -58.5 NC_005832.1 + 72675 0.66 0.694415
Target:  5'- aAGGGucccguugguccCAGGGguuuAGGAGGCCCUcccggagauaGGGGCg -3'
miRNA:   3'- -UCCCu-----------GUCCU----UUCUCCGGGAc---------UCCCG- -5'
27205 3' -58.5 NC_005832.1 + 91557 0.66 0.69033
Target:  5'- cAGGcACAGGGAGGccauGGUCCUGuccauccacccggcGGGCa -3'
miRNA:   3'- -UCCcUGUCCUUUCu---CCGGGACu-------------CCCG- -5'
27205 3' -58.5 NC_005832.1 + 80954 0.66 0.686238
Target:  5'- cAGGaGGCuGGuguac-GCCCUGAGGGUg -3'
miRNA:   3'- -UCC-CUGuCCuuucucCGGGACUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 26443 0.67 0.675975
Target:  5'- gAGGGACAGGAccuGGGGag-UGucGGGCa -3'
miRNA:   3'- -UCCCUGUCCUuu-CUCCgggACu-CCCG- -5'
27205 3' -58.5 NC_005832.1 + 11780 0.67 0.675975
Target:  5'- uGGcucGGCcGGggGGAGGUCgacGAGGGCa -3'
miRNA:   3'- uCC---CUGuCCuuUCUCCGGga-CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 84686 0.67 0.675975
Target:  5'- cAGGGcUAGGGAcGAGGCCaugGcAGcGGCg -3'
miRNA:   3'- -UCCCuGUCCUUuCUCCGGga-C-UC-CCG- -5'
27205 3' -58.5 NC_005832.1 + 60471 0.67 0.6698
Target:  5'- --aGGCAGGGAAGGGGCCUaaugGAGaagcuagagaugcccGGCg -3'
miRNA:   3'- uccCUGUCCUUUCUCCGGGa---CUC---------------CCG- -5'
27205 3' -58.5 NC_005832.1 + 44127 0.67 0.665676
Target:  5'- -aGGACGGG-AGGAGGUCCcGcGGGa -3'
miRNA:   3'- ucCCUGUCCuUUCUCCGGGaCuCCCg -5'
27205 3' -58.5 NC_005832.1 + 15818 0.67 0.665676
Target:  5'- cGGGAgAGGcgcuccAAGAGGCCCUGucGa- -3'
miRNA:   3'- uCCCUgUCCu-----UUCUCCGGGACucCcg -5'
27205 3' -58.5 NC_005832.1 + 79966 0.67 0.665676
Target:  5'- uGGGACAGGugGAGGAGGgaggUGGGGGa -3'
miRNA:   3'- uCCCUGUCC--UUUCUCCggg-ACUCCCg -5'
27205 3' -58.5 NC_005832.1 + 32649 0.67 0.664644
Target:  5'- uGGGACugcaaaguGGGAGGGAGccauugcGCCCgcguAGGGCc -3'
miRNA:   3'- uCCCUG--------UCCUUUCUC-------CGGGac--UCCCG- -5'
27205 3' -58.5 NC_005832.1 + 74509 0.67 0.664644
Target:  5'- --cGACAGGGAGGAGGUaaaaauggcucagCCUaccAGGGCg -3'
miRNA:   3'- uccCUGUCCUUUCUCCG-------------GGAc--UCCCG- -5'
27205 3' -58.5 NC_005832.1 + 43164 0.67 0.655349
Target:  5'- cAGGcu-GGGAAAG-GGCCUgccgggcuucuuUGAGGGCg -3'
miRNA:   3'- -UCCcugUCCUUUCuCCGGG------------ACUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 1588 0.67 0.645003
Target:  5'- gGGGGACA-GAGAGuuccaCCUGAGGuGCg -3'
miRNA:   3'- -UCCCUGUcCUUUCuccg-GGACUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.