miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27205 3' -58.5 NC_005832.1 + 54719 0.67 0.634646
Target:  5'- uGGGGACGGGGuucgacgccugcGAGAGGaccggccugugCCUGGcGGCg -3'
miRNA:   3'- -UCCCUGUCCU------------UUCUCCg----------GGACUcCCG- -5'
27205 3' -58.5 NC_005832.1 + 21073 0.67 0.634646
Target:  5'- cAGGGGgAGGAGGcuggugauugccGGGGCCCguAGGGa -3'
miRNA:   3'- -UCCCUgUCCUUU------------CUCCGGGacUCCCg -5'
27205 3' -58.5 NC_005832.1 + 47744 0.67 0.634646
Target:  5'- -uGGGCAuGGAAGAGGagcucugCCUGAcGGGCa -3'
miRNA:   3'- ucCCUGUcCUUUCUCCg------GGACU-CCCG- -5'
27205 3' -58.5 NC_005832.1 + 75931 0.67 0.63361
Target:  5'- -aGGAgAGGGGAGAGGCaCCgGAccuaaccGGGUg -3'
miRNA:   3'- ucCCUgUCCUUUCUCCG-GGaCU-------CCCG- -5'
27205 3' -58.5 NC_005832.1 + 46040 0.67 0.624287
Target:  5'- gAGGGAaguCAGGuccgcccAGGGGuCCCUguccuccagGAGGGCc -3'
miRNA:   3'- -UCCCU---GUCCuu-----UCUCC-GGGA---------CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 75756 0.67 0.62118
Target:  5'- cAGGGccgugagguccgcuGCGGGcGAGAGGUCCauUGGucuGGGCg -3'
miRNA:   3'- -UCCC--------------UGUCCuUUCUCCGGG--ACU---CCCG- -5'
27205 3' -58.5 NC_005832.1 + 35254 0.68 0.618074
Target:  5'- cAGGGACAGGcugguucucuuugcgGGAGAcGGCaa-GAGGGUc -3'
miRNA:   3'- -UCCCUGUCC---------------UUUCU-CCGggaCUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 95275 0.68 0.613935
Target:  5'- aAGGuGAUAGGgcAG-GGCagCUGGGGGUc -3'
miRNA:   3'- -UCC-CUGUCCuuUCuCCGg-GACUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 29320 0.68 0.613935
Target:  5'- --uGACcgAGGAGAGGGGaCCuCUGAGGuGCu -3'
miRNA:   3'- uccCUG--UCCUUUCUCC-GG-GACUCC-CG- -5'
27205 3' -58.5 NC_005832.1 + 29567 0.68 0.603597
Target:  5'- cAGGGGCAGGAGcaGGGUCCc---GGCg -3'
miRNA:   3'- -UCCCUGUCCUUucUCCGGGacucCCG- -5'
27205 3' -58.5 NC_005832.1 + 72842 0.68 0.603597
Target:  5'- cAGGGuCuGGGGccuGAGcGCCCUcAGGGCc -3'
miRNA:   3'- -UCCCuGuCCUUu--CUC-CGGGAcUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 59907 0.68 0.582992
Target:  5'- -uGGAU---GAGGAGGCUCUgGAGGGCa -3'
miRNA:   3'- ucCCUGuccUUUCUCCGGGA-CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 17751 0.68 0.582992
Target:  5'- -cGGAgGGGGcuGGGGCUCUG-GGGUu -3'
miRNA:   3'- ucCCUgUCCUuuCUCCGGGACuCCCG- -5'
27205 3' -58.5 NC_005832.1 + 66384 0.68 0.582992
Target:  5'- cAGGGACGGaGAcGGGGGCaugucauagCCUccAGGGCa -3'
miRNA:   3'- -UCCCUGUC-CUuUCUCCG---------GGAc-UCCCG- -5'
27205 3' -58.5 NC_005832.1 + 87353 0.68 0.582992
Target:  5'- cAGGGugAGGGu---GGCCCUgucuacguucagGAGGGa -3'
miRNA:   3'- -UCCCugUCCUuucuCCGGGA------------CUCCCg -5'
27205 3' -58.5 NC_005832.1 + 99567 0.68 0.572741
Target:  5'- --cGGCGGGAAAGAuGGCCUUagcgaugacgaaGAGGGUc -3'
miRNA:   3'- uccCUGUCCUUUCU-CCGGGA------------CUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 79132 0.68 0.562532
Target:  5'- cGaGGACAGcGGu-GAGGCcuacgucucCCUGAGGGUg -3'
miRNA:   3'- uC-CCUGUC-CUuuCUCCG---------GGACUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 39847 0.69 0.552373
Target:  5'- cGGaGACGuGGGAGGuaugGGGCCa-GAGGGCc -3'
miRNA:   3'- uCC-CUGU-CCUUUC----UCCGGgaCUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 35890 0.69 0.542271
Target:  5'- ----gUAGGAGcucuGGCCCUGAGGGCc -3'
miRNA:   3'- ucccuGUCCUUucu-CCGGGACUCCCG- -5'
27205 3' -58.5 NC_005832.1 + 65648 0.69 0.53223
Target:  5'- -aGGACAGGA---AGGCCCUGgccgucuucAGGGg -3'
miRNA:   3'- ucCCUGUCCUuucUCCGGGAC---------UCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.