miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27205 5' -59.2 NC_005832.1 + 72734 0.66 0.737764
Target:  5'- gCCGUUgggCAAGACgGgUCCCaggggCCCAGAg -3'
miRNA:   3'- -GGCAGga-GUUCUGgCgAGGG-----GGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 42759 0.66 0.737763
Target:  5'- uCCGccaUCCUCuuGACCa-UCCaCCCCAGGu -3'
miRNA:   3'- -GGC---AGGAGuuCUGGcgAGG-GGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 29234 0.66 0.737763
Target:  5'- aCCGagCUCAAcGCCGUcCCuCCUCAGAc -3'
miRNA:   3'- -GGCagGAGUUcUGGCGaGG-GGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 20111 0.66 0.737763
Target:  5'- gCGaUCCUCAGGACCGCcugcaugaCgUCCGGGc -3'
miRNA:   3'- gGC-AGGAGUUCUGGCGag------GgGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 3272 0.66 0.728033
Target:  5'- uCCGgaaCCUCGuuccacACCGCcUCCCCCAGc -3'
miRNA:   3'- -GGCa--GGAGUuc----UGGCGaGGGGGGUCu -5'
27205 5' -59.2 NC_005832.1 + 43095 0.66 0.728033
Target:  5'- -aGUCCUCAAcauGGCCgagggggugggGUUCUCCCUGGAg -3'
miRNA:   3'- ggCAGGAGUU---CUGG-----------CGAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 17038 0.66 0.708335
Target:  5'- gCCGaCCUCGAGGgaGgUCUCCCCGa- -3'
miRNA:   3'- -GGCaGGAGUUCUggCgAGGGGGGUcu -5'
27205 5' -59.2 NC_005832.1 + 45941 0.66 0.706351
Target:  5'- gCCGUCCUCuacaagcugguGAUgGCUCagcuCCCCGGu -3'
miRNA:   3'- -GGCAGGAGuu---------CUGgCGAGg---GGGGUCu -5'
27205 5' -59.2 NC_005832.1 + 84552 0.67 0.668248
Target:  5'- aCGUagUCAAGcCCGC-CgCCCCAGAc -3'
miRNA:   3'- gGCAggAGUUCuGGCGaGgGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 94882 0.67 0.637849
Target:  5'- --aUCCUCcuGGGCCuGCagUCCCUCCAGAc -3'
miRNA:   3'- ggcAGGAGu-UCUGG-CG--AGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 38808 0.67 0.627697
Target:  5'- aCGUcauuaaCCUCAGGGCCuccaacaugGgUCUCCCCAGGc -3'
miRNA:   3'- gGCA------GGAGUUCUGG---------CgAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 36365 0.68 0.617547
Target:  5'- aCGgCCUCAAGGuCCGCgacCCUCCCGc- -3'
miRNA:   3'- gGCaGGAGUUCU-GGCGa--GGGGGGUcu -5'
27205 5' -59.2 NC_005832.1 + 76066 0.68 0.616533
Target:  5'- aCGUCCaCAGGACCaggguggGUUCCCaCCAGGc -3'
miRNA:   3'- gGCAGGaGUUCUGG-------CGAGGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 47588 0.68 0.607409
Target:  5'- gCCGgCCUCGcGGCCGCcaugCCCgUCAGGc -3'
miRNA:   3'- -GGCaGGAGUuCUGGCGa---GGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 90933 0.68 0.601334
Target:  5'- aCCGaCCUCAGGAgCCucaucucggccgaggGCgggCCCCUCAGGa -3'
miRNA:   3'- -GGCaGGAGUUCU-GG---------------CGa--GGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 72986 0.68 0.597289
Target:  5'- aCCGUCUgggCccuGAGGgCGCUCagggCCCCAGAc -3'
miRNA:   3'- -GGCAGGa--G---UUCUgGCGAGg---GGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 47941 0.68 0.597289
Target:  5'- gCUGUCuCUCGAGGCCGaCgacuaCCCCgAGGc -3'
miRNA:   3'- -GGCAG-GAGUUCUGGC-Gag---GGGGgUCU- -5'
27205 5' -59.2 NC_005832.1 + 41986 0.69 0.536343
Target:  5'- uCgGUCCUCcuGGCCaucgccggggugaGCUUCUCCCAGGg -3'
miRNA:   3'- -GgCAGGAGuuCUGG-------------CGAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 669 0.69 0.527517
Target:  5'- gUGUCCUC-GGACgCGgaCCCCgCCGGGg -3'
miRNA:   3'- gGCAGGAGuUCUG-GCgaGGGG-GGUCU- -5'
27205 5' -59.2 NC_005832.1 + 81008 0.69 0.516805
Target:  5'- cCCGgggCCUCAaaccugggguuaaAGACCGUcaUCCCgUCCAGGg -3'
miRNA:   3'- -GGCa--GGAGU-------------UCUGGCG--AGGG-GGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.