miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27205 5' -59.2 NC_005832.1 + 67325 1.09 0.001023
Target:  5'- uCCGUCCUCAAGACCGCUCCCCCCAGAc -3'
miRNA:   3'- -GGCAGGAGUUCUGGCGAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 72734 0.66 0.737764
Target:  5'- gCCGUUgggCAAGACgGgUCCCaggggCCCAGAg -3'
miRNA:   3'- -GGCAGga-GUUCUGgCgAGGG-----GGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 3272 0.66 0.728033
Target:  5'- uCCGgaaCCUCGuuccacACCGCcUCCCCCAGc -3'
miRNA:   3'- -GGCa--GGAGUuc----UGGCGaGGGGGGUCu -5'
27205 5' -59.2 NC_005832.1 + 43095 0.66 0.728033
Target:  5'- -aGUCCUCAAcauGGCCgagggggugggGUUCUCCCUGGAg -3'
miRNA:   3'- ggCAGGAGUU---CUGG-----------CGAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 38808 0.67 0.627697
Target:  5'- aCGUcauuaaCCUCAGGGCCuccaacaugGgUCUCCCCAGGc -3'
miRNA:   3'- gGCA------GGAGUUCUGG---------CgAGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 76066 0.68 0.616533
Target:  5'- aCGUCCaCAGGACCaggguggGUUCCCaCCAGGc -3'
miRNA:   3'- gGCAGGaGUUCUGG-------CGAGGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 47588 0.68 0.607409
Target:  5'- gCCGgCCUCGcGGCCGCcaugCCCgUCAGGc -3'
miRNA:   3'- -GGCaGGAGUuCUGGCGa---GGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 27033 0.7 0.489003
Target:  5'- aCGUCCUCAGGcCCGCgaaacgUCCgugggagaaCCCGGAg -3'
miRNA:   3'- gGCAGGAGUUCuGGCGa-----GGG---------GGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 55879 0.7 0.486166
Target:  5'- uCUGUCCUCcguucugaugaccaGAGAUUGUUCCCCUCAu- -3'
miRNA:   3'- -GGCAGGAG--------------UUCUGGCGAGGGGGGUcu -5'
27205 5' -59.2 NC_005832.1 + 19953 0.7 0.479578
Target:  5'- -gGUCCUCGGGGCauCUCCagCCCGGAc -3'
miRNA:   3'- ggCAGGAGUUCUGgcGAGGg-GGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 80680 0.7 0.470243
Target:  5'- cCCGUCUaCGAGGaccCCGUcCCCUCCAGGg -3'
miRNA:   3'- -GGCAGGaGUUCU---GGCGaGGGGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 19989 0.78 0.155425
Target:  5'- gCgGUCCUgAGGAUCGCUCCCaCCAGGg -3'
miRNA:   3'- -GgCAGGAgUUCUGGCGAGGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 91814 0.74 0.285925
Target:  5'- cCCGUCCUCGggagccgguuuuAGGCUGCUCCUggCCCAc- -3'
miRNA:   3'- -GGCAGGAGU------------UCUGGCGAGGG--GGGUcu -5'
27205 5' -59.2 NC_005832.1 + 20995 0.71 0.425035
Target:  5'- uCUGUCCUcCAGGAUCccaGCUCCCgCCGGc -3'
miRNA:   3'- -GGCAGGA-GUUCUGG---CGAGGGgGGUCu -5'
27205 5' -59.2 NC_005832.1 + 79555 0.71 0.425035
Target:  5'- cCCGggCCUCAGGGCCaaccuGCUCCCCaacaAGGc -3'
miRNA:   3'- -GGCa-GGAGUUCUGG-----CGAGGGGgg--UCU- -5'
27205 5' -59.2 NC_005832.1 + 65572 0.71 0.433871
Target:  5'- aCGUCCUCGggcaGGACC-CUgCCCgCCGGGg -3'
miRNA:   3'- gGCAGGAGU----UCUGGcGAgGGG-GGUCU- -5'
27205 5' -59.2 NC_005832.1 + 43182 0.71 0.442812
Target:  5'- gCCGggcuUCUUUGAGGgCGCUCCCgCCAGGc -3'
miRNA:   3'- -GGC----AGGAGUUCUgGCGAGGGgGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 79283 0.7 0.461002
Target:  5'- aCUGUCgC-CAgggAGGCCGCUCCaCCCAGGc -3'
miRNA:   3'- -GGCAG-GaGU---UCUGGCGAGGgGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 42759 0.66 0.737763
Target:  5'- uCCGccaUCCUCuuGACCa-UCCaCCCCAGGu -3'
miRNA:   3'- -GGC---AGGAGuuCUGGcgAGG-GGGGUCU- -5'
27205 5' -59.2 NC_005832.1 + 6618 0.73 0.342932
Target:  5'- cCCGUCCUCGucauccGCCGcCUCCgCCuCCAGGa -3'
miRNA:   3'- -GGCAGGAGUuc----UGGC-GAGG-GG-GGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.