miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27206 3' -57 NC_005832.1 + 47712 0.66 0.794713
Target:  5'- aUGGCGG-CCGCgaggcCGGCCaaGGAGAg -3'
miRNA:   3'- cACCGCUaGGUGa----GCCGGacCCUUUg -5'
27206 3' -57 NC_005832.1 + 12036 0.66 0.794713
Target:  5'- -aGGCcGUCUug-CGGCCcgcuaUGGGAGACg -3'
miRNA:   3'- caCCGcUAGGugaGCCGG-----ACCCUUUG- -5'
27206 3' -57 NC_005832.1 + 14446 0.66 0.766273
Target:  5'- --cGCGAUCuCGCguaCGGgCUGGGAucGACa -3'
miRNA:   3'- cacCGCUAG-GUGa--GCCgGACCCU--UUG- -5'
27206 3' -57 NC_005832.1 + 95951 0.66 0.766273
Target:  5'- -cGGCGGUCaagggaGCggccgCGGCCaGGGcAGCa -3'
miRNA:   3'- caCCGCUAGg-----UGa----GCCGGaCCCuUUG- -5'
27206 3' -57 NC_005832.1 + 10595 0.66 0.75653
Target:  5'- gGUGGaggaGAgCCAC-CGGCa-GGGAGACu -3'
miRNA:   3'- -CACCg---CUaGGUGaGCCGgaCCCUUUG- -5'
27206 3' -57 NC_005832.1 + 75111 0.67 0.736707
Target:  5'- aGUGGCGggCCACUgGGacgaCgugagGGGAcccAGCg -3'
miRNA:   3'- -CACCGCuaGGUGAgCCg---Ga----CCCU---UUG- -5'
27206 3' -57 NC_005832.1 + 78810 0.67 0.736707
Target:  5'- cGUGaGCGGUCUGCgcCGGCCacucUGGGGcgGGCu -3'
miRNA:   3'- -CAC-CGCUAGGUGa-GCCGG----ACCCU--UUG- -5'
27206 3' -57 NC_005832.1 + 102382 0.67 0.735705
Target:  5'- aGUGGCGuaccgcUCCAgaucugucuccucUUCGGCCUcGGGucGCa -3'
miRNA:   3'- -CACCGCu-----AGGU-------------GAGCCGGA-CCCuuUG- -5'
27206 3' -57 NC_005832.1 + 54659 0.67 0.716503
Target:  5'- -aGGagcAUCCugUCGGCCaGGGcgGCg -3'
miRNA:   3'- caCCgc-UAGGugAGCCGGaCCCuuUG- -5'
27206 3' -57 NC_005832.1 + 67560 0.68 0.643912
Target:  5'- -aGGUGAgccgCCGCcgCGGCCcacucUGGGAAAg -3'
miRNA:   3'- caCCGCUa---GGUGa-GCCGG-----ACCCUUUg -5'
27206 3' -57 NC_005832.1 + 75720 0.68 0.63343
Target:  5'- --uGCGGUCCugUcugCGGCCgUGGGGAGg -3'
miRNA:   3'- cacCGCUAGGugA---GCCGG-ACCCUUUg -5'
27206 3' -57 NC_005832.1 + 27598 0.69 0.580129
Target:  5'- cGUGGaCGAugaguacUCCAUagaCGGCCUGGGGGc- -3'
miRNA:   3'- -CACC-GCU-------AGGUGa--GCCGGACCCUUug -5'
27206 3' -57 NC_005832.1 + 55771 0.7 0.5708
Target:  5'- -cGGCGGUCCAUgCGGUaaaguggucuuCUGuGGGAGCg -3'
miRNA:   3'- caCCGCUAGGUGaGCCG-----------GAC-CCUUUG- -5'
27206 3' -57 NC_005832.1 + 10895 0.72 0.455416
Target:  5'- -cGGCcuUCCAguccgacgccuacgcCUCGGCCUGGGAccagGACg -3'
miRNA:   3'- caCCGcuAGGU---------------GAGCCGGACCCU----UUG- -5'
27206 3' -57 NC_005832.1 + 67690 1.1 0.001274
Target:  5'- gGUGGCGAUCCACUCGGCCUGGGAAACg -3'
miRNA:   3'- -CACCGCUAGGUGAGCCGGACCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.