miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27207 3' -56 NC_005832.1 + 81297 0.66 0.865174
Target:  5'- --uGGGCCAagaGCGGcuacugucccgguguGACCAgcaaccagaucccaGAGGGUGAa -3'
miRNA:   3'- ccuCCCGGU---UGCC---------------UUGGU--------------UUCCCGCU- -5'
27207 3' -56 NC_005832.1 + 65292 0.66 0.863637
Target:  5'- aGGGGGC--ACGGGAcCCAAcaggaccauggucAGGGCGc -3'
miRNA:   3'- cCUCCCGguUGCCUU-GGUU-------------UCCCGCu -5'
27207 3' -56 NC_005832.1 + 39367 0.66 0.856616
Target:  5'- -aGGGGCCcAgGGGAgCAGAGGGauCGGc -3'
miRNA:   3'- ccUCCCGGuUgCCUUgGUUUCCC--GCU- -5'
27207 3' -56 NC_005832.1 + 95503 0.66 0.848615
Target:  5'- cGGAGcGGCCAGggucccCGGGAcacccucagucuCCAGA-GGCGAa -3'
miRNA:   3'- -CCUC-CCGGUU------GCCUU------------GGUUUcCCGCU- -5'
27207 3' -56 NC_005832.1 + 71125 0.66 0.848615
Target:  5'- aGGGGGCCuAACGGGgacccuGCCGuacucuuuGGGCu- -3'
miRNA:   3'- cCUCCCGG-UUGCCU------UGGUuu------CCCGcu -5'
27207 3' -56 NC_005832.1 + 60476 0.66 0.840409
Target:  5'- gGGAagGGGCCuAAUGGAgaaGCUAGAGaugcccGGCGGg -3'
miRNA:   3'- -CCU--CCCGG-UUGCCU---UGGUUUC------CCGCU- -5'
27207 3' -56 NC_005832.1 + 38706 0.66 0.840409
Target:  5'- aGAGGGUU-GCGGAGCuCGAGGaGGCu- -3'
miRNA:   3'- cCUCCCGGuUGCCUUG-GUUUC-CCGcu -5'
27207 3' -56 NC_005832.1 + 76108 0.66 0.840409
Target:  5'- uGGGGGCC-ACGG--CCAAGaGGUGAg -3'
miRNA:   3'- cCUCCCGGuUGCCuuGGUUUcCCGCU- -5'
27207 3' -56 NC_005832.1 + 52699 0.66 0.832007
Target:  5'- uGAGGGCCGugGugguGGACUu--GGGCa- -3'
miRNA:   3'- cCUCCCGGUugC----CUUGGuuuCCCGcu -5'
27207 3' -56 NC_005832.1 + 2162 0.66 0.832007
Target:  5'- aGGAGGGCaGACcccaGGACCGucuuaaaguccGAGGGgGAc -3'
miRNA:   3'- -CCUCCCGgUUGc---CUUGGU-----------UUCCCgCU- -5'
27207 3' -56 NC_005832.1 + 28068 0.66 0.832007
Target:  5'- -cAGGGUgGugGGGACCAAGaGGCc- -3'
miRNA:   3'- ccUCCCGgUugCCUUGGUUUcCCGcu -5'
27207 3' -56 NC_005832.1 + 7844 0.66 0.832007
Target:  5'- cGGAGGGUgGgugGCGGugaCAAAGGG-GAc -3'
miRNA:   3'- -CCUCCCGgU---UGCCuugGUUUCCCgCU- -5'
27207 3' -56 NC_005832.1 + 67903 0.67 0.805699
Target:  5'- aGGAGGGCC---GGggUCucuGGGgGAa -3'
miRNA:   3'- -CCUCCCGGuugCCuuGGuuuCCCgCU- -5'
27207 3' -56 NC_005832.1 + 67944 0.67 0.805699
Target:  5'- aGAGuGGCCAgaguACGGG--CAGAGGaGCGAc -3'
miRNA:   3'- cCUC-CCGGU----UGCCUugGUUUCC-CGCU- -5'
27207 3' -56 NC_005832.1 + 66625 0.67 0.796592
Target:  5'- cGAGGGCC--UGGA--CGAGGGGCa- -3'
miRNA:   3'- cCUCCCGGuuGCCUugGUUUCCCGcu -5'
27207 3' -56 NC_005832.1 + 53379 0.67 0.796592
Target:  5'- aGAGGGCCAcCGGuuCCGAGacuGGGagaGAu -3'
miRNA:   3'- cCUCCCGGUuGCCuuGGUUU---CCCg--CU- -5'
27207 3' -56 NC_005832.1 + 16658 0.67 0.795673
Target:  5'- gGGAGuGGCgCAGguguaauUGGAGCCAacggAAGGGUGu -3'
miRNA:   3'- -CCUC-CCG-GUU-------GCCUUGGU----UUCCCGCu -5'
27207 3' -56 NC_005832.1 + 36015 0.67 0.795673
Target:  5'- aGAGGGCCuGACGGccgagcugguGCCGuuaaagugcgucgAGGGGUGGg -3'
miRNA:   3'- cCUCCCGG-UUGCCu---------UGGU-------------UUCCCGCU- -5'
27207 3' -56 NC_005832.1 + 47952 0.67 0.78733
Target:  5'- -cAGGGCCAccACGGuGACCuc-GGGCuGAg -3'
miRNA:   3'- ccUCCCGGU--UGCC-UUGGuuuCCCG-CU- -5'
27207 3' -56 NC_005832.1 + 79192 0.67 0.777923
Target:  5'- cGAGGaGCUcAUGGAgGCCGccggGAGGGUGAu -3'
miRNA:   3'- cCUCC-CGGuUGCCU-UGGU----UUCCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.