miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27207 3' -56 NC_005832.1 + 72377 1.1 0.001618
Target:  5'- gGGAGGGCCAACGGAACCAAAGGGCGAc -3'
miRNA:   3'- -CCUCCCGGUUGCCUUGGUUUCCCGCU- -5'
27207 3' -56 NC_005832.1 + 83432 0.77 0.271157
Target:  5'- aGAGGGCCGGCgGGGACauagaAGAGGGCc- -3'
miRNA:   3'- cCUCCCGGUUG-CCUUGg----UUUCCCGcu -5'
27207 3' -56 NC_005832.1 + 89928 0.75 0.350844
Target:  5'- -cGGGGUUGGCGGAACCGgcaGAGGGCu- -3'
miRNA:   3'- ccUCCCGGUUGCCUUGGU---UUCCCGcu -5'
27207 3' -56 NC_005832.1 + 103982 0.73 0.455144
Target:  5'- uGAGGGCCGccGCGGAcGCCGuGGGGGUa- -3'
miRNA:   3'- cCUCCCGGU--UGCCU-UGGU-UUCCCGcu -5'
27207 3' -56 NC_005832.1 + 36534 0.73 0.464578
Target:  5'- -cAGGGCCG--GGGGCCAcAGGGCGu -3'
miRNA:   3'- ccUCCCGGUugCCUUGGUuUCCCGCu -5'
27207 3' -56 NC_005832.1 + 67023 0.73 0.464578
Target:  5'- cGAGGGCCcuGGCGGcGGCCGuggcGAGGGCc- -3'
miRNA:   3'- cCUCCCGG--UUGCC-UUGGU----UUCCCGcu -5'
27207 3' -56 NC_005832.1 + 67614 0.72 0.533208
Target:  5'- uGGAGGGac-GCGGAACCugcGGGCa- -3'
miRNA:   3'- -CCUCCCgguUGCCUUGGuuuCCCGcu -5'
27207 3' -56 NC_005832.1 + 39545 0.71 0.553507
Target:  5'- gGGAGGaCCcGCGGGACCAGuGGGaGAc -3'
miRNA:   3'- -CCUCCcGGuUGCCUUGGUUuCCCgCU- -5'
27207 3' -56 NC_005832.1 + 39088 0.71 0.574029
Target:  5'- aGGAGGGCCGucCGGGACCccAGGuucaCGGu -3'
miRNA:   3'- -CCUCCCGGUu-GCCUUGGuuUCCc---GCU- -5'
27207 3' -56 NC_005832.1 + 32410 0.71 0.574029
Target:  5'- aGGAGGaccaucaacGUCAACGGGACCGcuccaGAGGccGCGAg -3'
miRNA:   3'- -CCUCC---------CGGUUGCCUUGGU-----UUCC--CGCU- -5'
27207 3' -56 NC_005832.1 + 81135 0.7 0.604075
Target:  5'- aGGAGGGCCGucguagacugggaACGGGGCCuu-GcGGUGc -3'
miRNA:   3'- -CCUCCCGGU-------------UGCCUUGGuuuC-CCGCu -5'
27207 3' -56 NC_005832.1 + 2662 0.7 0.605116
Target:  5'- aGGAGGGCCugUGGA-CUAu--GGCGAg -3'
miRNA:   3'- -CCUCCCGGuuGCCUuGGUuucCCGCU- -5'
27207 3' -56 NC_005832.1 + 19509 0.7 0.625957
Target:  5'- ----uGCCAGCGGAGCCGcagaGAGGGCc- -3'
miRNA:   3'- ccuccCGGUUGCCUUGGU----UUCCCGcu -5'
27207 3' -56 NC_005832.1 + 39856 0.7 0.625957
Target:  5'- gGGAGGu---AUGGGGCCAGAGGGCc- -3'
miRNA:   3'- -CCUCCcgguUGCCUUGGUUUCCCGcu -5'
27207 3' -56 NC_005832.1 + 50924 0.7 0.654111
Target:  5'- uGGAucGGCCGGuccagucaggcgcgUGGGACCcAGGGGCGAc -3'
miRNA:   3'- -CCUc-CCGGUU--------------GCCUUGGuUUCCCGCU- -5'
27207 3' -56 NC_005832.1 + 72798 0.7 0.657234
Target:  5'- --uGGGaCCAACGGGACCcuuuGGGCc- -3'
miRNA:   3'- ccuCCC-GGUUGCCUUGGuuu-CCCGcu -5'
27207 3' -56 NC_005832.1 + 72658 0.7 0.657234
Target:  5'- -cGGGGcCCGACGGc-CCAAAGGGUc- -3'
miRNA:   3'- ccUCCC-GGUUGCCuuGGUUUCCCGcu -5'
27207 3' -56 NC_005832.1 + 18595 0.69 0.667629
Target:  5'- -cAGGaGCCu-CGGAACCGA-GGGUGGg -3'
miRNA:   3'- ccUCC-CGGuuGCCUUGGUUuCCCGCU- -5'
27207 3' -56 NC_005832.1 + 97243 0.69 0.677995
Target:  5'- -cAGGGCCAccGCGGcGGCCugcuccAGGGCGu -3'
miRNA:   3'- ccUCCCGGU--UGCC-UUGGuu----UCCCGCu -5'
27207 3' -56 NC_005832.1 + 48934 0.69 0.682131
Target:  5'- uGGAGGGCUAcaaGaGAACCAGgaccuggguccaaauAGGGCa- -3'
miRNA:   3'- -CCUCCCGGUug-C-CUUGGUU---------------UCCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.