miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27208	5'	-54.1	NC_005832.1	+	41103	0.68	0.789442
	Target:  5'- cUCUCuGAGcacgcuucuggccuuAUCAGGGGCAGCGcuggaGCCg- -3' miRNA:   3'- cAGAG-UUC---------------UAGUCCCCGUCGU-----UGGaa -5'
27208	5'	-54.1	NC_005832.1	+	101896	0.68	0.772718
	Target:  5'- -cCUCAAGAggcgCAGGGGCcagguuuuuggaguGGCAugCg- -3' miRNA:   3'- caGAGUUCUa---GUCCCCG--------------UCGUugGaa -5'
27208	5'	-54.1	NC_005832.1	+	29907	0.68	0.765709
	Target:  5'- gGUCUgGGGcggCGGGGGCGGCGguggagGCCa- -3' miRNA:   3'- -CAGAgUUCua-GUCCCCGUCGU------UGGaa -5'
27208	5'	-54.1	NC_005832.1	+	7092	0.69	0.734972
	Target:  5'- aUCUCAGGucUCAGGuccccGGCGGUGACCa- -3' miRNA:   3'- cAGAGUUCu-AGUCC-----CCGUCGUUGGaa -5'
27208	5'	-54.1	NC_005832.1	+	84412	0.7	0.671068
	Target:  5'- -aCUCuAGAUCGucuGGGGCGGCGGgCUUg -3' miRNA:   3'- caGAGuUCUAGU---CCCCGUCGUUgGAA- -5'
27208	5'	-54.1	NC_005832.1	+	80581	0.7	0.638485
	Target:  5'- uUCUCAGGAUgggagcagcCAGGGGgGGCAuggGCCa- -3' miRNA:   3'- cAGAGUUCUA---------GUCCCCgUCGU---UGGaa -5'
27208	5'	-54.1	NC_005832.1	+	75547	1.04	0.004258
	Target:  5'- gGUCUCAAGAUCAGGGGCAGCAACCUUu -3' miRNA:   3'- -CAGAGUUCUAGUCCCCGUCGUUGGAA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home