miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27209 3' -59.8 NC_005832.1 + 9754 0.66 0.703725
Target:  5'- gCCu--GCCuCCCucCGCCcugaguACAGCGCCg -3'
miRNA:   3'- -GGcacCGG-GGGuuGCGGu-----UGUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 56348 0.66 0.699749
Target:  5'- gCgGUGGCCaagcucaaguccaCCGACGgUuACGGUGCCc -3'
miRNA:   3'- -GgCACCGGg------------GGUUGCgGuUGUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 1541 0.66 0.697758
Target:  5'- gCCGaUGGCCUgagccuggagugcgCCAugGCCAucucgccgugcaugACGGCugugGCCa -3'
miRNA:   3'- -GGC-ACCGGG--------------GGUugCGGU--------------UGUCG----CGG- -5'
27209 3' -59.8 NC_005832.1 + 29754 0.66 0.69377
Target:  5'- gCCGUgugccucaucuuGGCCUCCAcCGCCGcCccCGCCg -3'
miRNA:   3'- -GGCA------------CCGGGGGUuGCGGUuGucGCGG- -5'
27209 3' -59.8 NC_005832.1 + 72986 0.66 0.69377
Target:  5'- aCCGUcugGGCCCUgAggGCGCU--CAGgGCCc -3'
miRNA:   3'- -GGCA---CCGGGGgU--UGCGGuuGUCgCGG- -5'
27209 3' -59.8 NC_005832.1 + 18134 0.66 0.692772
Target:  5'- cCUGUGcagcagcagcaacGCCCUguGCaGCagCAGCAGCGCCc -3'
miRNA:   3'- -GGCAC-------------CGGGGguUG-CG--GUUGUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 72854 0.66 0.683765
Target:  5'- cCUGaGcGCCCUCAGgGCCcaGACGGUGCa -3'
miRNA:   3'- -GGCaC-CGGGGGUUgCGG--UUGUCGCGg -5'
27209 3' -59.8 NC_005832.1 + 77169 0.66 0.683765
Target:  5'- aCCGgcgaucGGCCC--GACGCCGA-GGUGCCc -3'
miRNA:   3'- -GGCa-----CCGGGggUUGCGGUUgUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 96894 0.66 0.683765
Target:  5'- aCCuUGGCcagcaucuCCCUGACGCCGugAGagucuGCCg -3'
miRNA:   3'- -GGcACCG--------GGGGUUGCGGUugUCg----CGG- -5'
27209 3' -59.8 NC_005832.1 + 35563 0.66 0.683765
Target:  5'- --cUGGCCCaCCuaGACGCaga-GGCGCCc -3'
miRNA:   3'- ggcACCGGG-GG--UUGCGguugUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 18197 0.66 0.682762
Target:  5'- cCUGUGcagcagcagcagcGCCCUgugcagcagcagCAGCGCCcugugcagcagcAGCAGCGCCc -3'
miRNA:   3'- -GGCAC-------------CGGGG------------GUUGCGG------------UUGUCGCGG- -5'
27209 3' -59.8 NC_005832.1 + 35180 0.66 0.673719
Target:  5'- gCGUGGCCUCUGugGgaGACAGCcUCa -3'
miRNA:   3'- gGCACCGGGGGUugCggUUGUCGcGG- -5'
27209 3' -59.8 NC_005832.1 + 53198 0.66 0.673719
Target:  5'- uCCaUGGCCCUguAgGCCAggGCAGCcuuCCa -3'
miRNA:   3'- -GGcACCGGGGguUgCGGU--UGUCGc--GG- -5'
27209 3' -59.8 NC_005832.1 + 84767 0.66 0.673719
Target:  5'- aCCGUGGaCCgUgGACGCCAAaGGgGUa -3'
miRNA:   3'- -GGCACC-GGgGgUUGCGGUUgUCgCGg -5'
27209 3' -59.8 NC_005832.1 + 43293 0.66 0.673719
Target:  5'- cCCGgcaGGCCcuuuCCCAGC-CUGACGGUgGCCa -3'
miRNA:   3'- -GGCa--CCGG----GGGUUGcGGUUGUCG-CGG- -5'
27209 3' -59.8 NC_005832.1 + 74694 0.66 0.673719
Target:  5'- gCCGUGuuuGCCCUgGAUGCCGuaaAGgGCUu -3'
miRNA:   3'- -GGCAC---CGGGGgUUGCGGUug-UCgCGG- -5'
27209 3' -59.8 NC_005832.1 + 103637 0.66 0.663639
Target:  5'- -gGUGGCCUCCGACauacaGUCGGgAGcCGUCa -3'
miRNA:   3'- ggCACCGGGGGUUG-----CGGUUgUC-GCGG- -5'
27209 3' -59.8 NC_005832.1 + 78682 0.66 0.663639
Target:  5'- -aGUGGCCggcgcagaCCGcucACGCCAAaGGCGCa -3'
miRNA:   3'- ggCACCGGg-------GGU---UGCGGUUgUCGCGg -5'
27209 3' -59.8 NC_005832.1 + 28113 0.66 0.663639
Target:  5'- aCCGUGaaGCCUCCgAGCGCaGAUuGCGCg -3'
miRNA:   3'- -GGCAC--CGGGGG-UUGCGgUUGuCGCGg -5'
27209 3' -59.8 NC_005832.1 + 19522 0.66 0.663639
Target:  5'- aUGUGGUUCacuAUGCCAGCGGaGCCg -3'
miRNA:   3'- gGCACCGGGgguUGCGGUUGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.