Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2721 | 5' | -49.5 | NC_001491.2 | + | 54347 | 0.67 | 0.991271 |
Target: 5'- -cGCcUGCGaCCcgGCAcCCACGGAGAGCg -3' miRNA: 3'- auUGcACGUaGG--UGU-GGUGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 80802 | 0.67 | 0.989983 |
Target: 5'- cGGCGUGCu---GCGCCACGGGuugucuGACu -3' miRNA: 3'- aUUGCACGuaggUGUGGUGCCUu-----UUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 138045 | 0.68 | 0.98855 |
Target: 5'- cGGCGaGCGagCGCGCaGCGGAAGACc -3' miRNA: 3'- aUUGCaCGUagGUGUGgUGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 141522 | 0.68 | 0.985214 |
Target: 5'- cGAUGUGaa-CCGCcUCGCGGggGACg -3' miRNA: 3'- aUUGCACguaGGUGuGGUGCCuuUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 39392 | 0.68 | 0.98329 |
Target: 5'- cUGACGaauCAuuucuUCCGCGCCACGGAuAAUa -3' miRNA: 3'- -AUUGCac-GU-----AGGUGUGGUGCCUuUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 23400 | 0.68 | 0.981182 |
Target: 5'- aGGCGaguuccgGCAUCCACuCCACGGcccACg -3' miRNA: 3'- aUUGCa------CGUAGGUGuGGUGCCuuuUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 141778 | 0.69 | 0.978882 |
Target: 5'- gGGCGUGCGacggauccugCCGCaugGCCcaGCGGggGACg -3' miRNA: 3'- aUUGCACGUa---------GGUG---UGG--UGCCuuUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 146630 | 0.69 | 0.978882 |
Target: 5'- gGACG-GCGgacgCCcCGCCGCGGAGGcGCa -3' miRNA: 3'- aUUGCaCGUa---GGuGUGGUGCCUUU-UG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 94552 | 0.69 | 0.968866 |
Target: 5'- cAGCGUaGUAUCUcgauaacucgccaugGCACgACGGGGAGCa -3' miRNA: 3'- aUUGCA-CGUAGG---------------UGUGgUGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 41714 | 0.69 | 0.967246 |
Target: 5'- cUGAUGgGCAUCCACGaacccauCCAUGGAAAc- -3' miRNA: 3'- -AUUGCaCGUAGGUGU-------GGUGCCUUUug -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 68566 | 0.7 | 0.960546 |
Target: 5'- --uUGUGag-CCGCGCCGCGGGcgGCu -3' miRNA: 3'- auuGCACguaGGUGUGGUGCCUuuUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 58459 | 0.72 | 0.916238 |
Target: 5'- aAACGUGCccGUCCACGCgGcCGGGuuAGACc -3' miRNA: 3'- aUUGCACG--UAGGUGUGgU-GCCU--UUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 138922 | 0.72 | 0.916238 |
Target: 5'- ---aGUGUAcccaccaaaacUCCaACACCACGGAAAAUa -3' miRNA: 3'- auugCACGU-----------AGG-UGUGGUGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 62393 | 0.72 | 0.908059 |
Target: 5'- uUGACGUguagugccuccaugGCAUCCACcCCACGuAAGACg -3' miRNA: 3'- -AUUGCA--------------CGUAGGUGuGGUGCcUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 23719 | 0.73 | 0.867039 |
Target: 5'- -uGCGUGCAUgCGCACCuuuACGGAc--- -3' miRNA: 3'- auUGCACGUAgGUGUGG---UGCCUuuug -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 58796 | 0.74 | 0.833609 |
Target: 5'- aAGCGUGCAggacugCCgcaaACACCGCGGucuGAACc -3' miRNA: 3'- aUUGCACGUa-----GG----UGUGGUGCCu--UUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 142134 | 1.1 | 0.009707 |
Target: 5'- uUAACGUGCAUCCACACCACGGAAAACa -3' miRNA: 3'- -AUUGCACGUAGGUGUGGUGCCUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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