miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27210 5' -54.8 NC_005832.1 + 96051 0.66 0.896103
Target:  5'- aGGAAuCCCAGgaccggCAGGaCCAucaagaggggAGGGCCcgugUUCa -3'
miRNA:   3'- -CCUU-GGGUCa-----GUCC-GGU----------UCCUGG----AAG- -5'
27210 5' -54.8 NC_005832.1 + 81044 0.66 0.896103
Target:  5'- gGGAccuugacgGCCCAGUCugcuucggcaaaGGGuCCcGGGGCCUc- -3'
miRNA:   3'- -CCU--------UGGGUCAG------------UCC-GGuUCCUGGAag -5'
27210 5' -54.8 NC_005832.1 + 72748 0.66 0.889203
Target:  5'- cGGGuCCCAG--GGGCCcaGAGGGCCc-- -3'
miRNA:   3'- -CCUuGGGUCagUCCGG--UUCCUGGaag -5'
27210 5' -54.8 NC_005832.1 + 53300 0.66 0.882061
Target:  5'- cGAGCCCAuGaCGGGCUguGAGGAgCCggUCg -3'
miRNA:   3'- cCUUGGGU-CaGUCCGG--UUCCU-GGa-AG- -5'
27210 5' -54.8 NC_005832.1 + 7246 0.66 0.882061
Target:  5'- gGGAAgCCuccucuacgcuGGUCAccGCCGGGGACCUg- -3'
miRNA:   3'- -CCUUgGG-----------UCAGUc-CGGUUCCUGGAag -5'
27210 5' -54.8 NC_005832.1 + 73081 0.66 0.874681
Target:  5'- uGGggUCC-GUCGGGaCCuacGGGACCc-- -3'
miRNA:   3'- -CCuuGGGuCAGUCC-GGu--UCCUGGaag -5'
27210 5' -54.8 NC_005832.1 + 5229 0.66 0.874681
Target:  5'- uGGuGGCCCAGcUCAGGCuCAAGacccuGugCUUUg -3'
miRNA:   3'- -CC-UUGGGUC-AGUCCG-GUUC-----CugGAAG- -5'
27210 5' -54.8 NC_005832.1 + 39359 0.66 0.874681
Target:  5'- aGGGGCCCAG--GGGCCcaGGGGAgCa-- -3'
miRNA:   3'- -CCUUGGGUCagUCCGG--UUCCUgGaag -5'
27210 5' -54.8 NC_005832.1 + 88285 0.66 0.874681
Target:  5'- uGGAAggUCCAGgagcCuGGCCAGGGuCCUcUCg -3'
miRNA:   3'- -CCUU--GGGUCa---GuCCGGUUCCuGGA-AG- -5'
27210 5' -54.8 NC_005832.1 + 50360 0.66 0.867069
Target:  5'- cGAACCU-GUCuagcuuaaGGGCCGcgGGGACCUg- -3'
miRNA:   3'- cCUUGGGuCAG--------UCCGGU--UCCUGGAag -5'
27210 5' -54.8 NC_005832.1 + 95637 0.66 0.867069
Target:  5'- aGGAACCC---UAGGaCCGgcAGGACCaUCa -3'
miRNA:   3'- -CCUUGGGucaGUCC-GGU--UCCUGGaAG- -5'
27210 5' -54.8 NC_005832.1 + 95847 0.66 0.867069
Target:  5'- aGGAACCC---UAGGaCCGgcAGGACCaUCa -3'
miRNA:   3'- -CCUUGGGucaGUCC-GGU--UCCUGGaAG- -5'
27210 5' -54.8 NC_005832.1 + 21244 0.66 0.85923
Target:  5'- aGGAGgUCAGUCAggacGGCCGGGGcgucCCUa- -3'
miRNA:   3'- -CCUUgGGUCAGU----CCGGUUCCu---GGAag -5'
27210 5' -54.8 NC_005832.1 + 66688 0.67 0.851171
Target:  5'- uGGaAGCCCAGgccgcGGCCG-GGACCg-- -3'
miRNA:   3'- -CC-UUGGGUCagu--CCGGUuCCUGGaag -5'
27210 5' -54.8 NC_005832.1 + 474 0.67 0.84206
Target:  5'- aGGAGCCCagggcggcguccuGGUCgGGGCCccuguGGGCCg-- -3'
miRNA:   3'- -CCUUGGG-------------UCAG-UCCGGuu---CCUGGaag -5'
27210 5' -54.8 NC_005832.1 + 90924 0.67 0.825747
Target:  5'- aGGAGCCUcaUCucGGCCGAGGGCg--- -3'
miRNA:   3'- -CCUUGGGucAGu-CCGGUUCCUGgaag -5'
27210 5' -54.8 NC_005832.1 + 52193 0.67 0.825747
Target:  5'- uGGACgCAGUgcagAGGCUGAGGGCCaUCg -3'
miRNA:   3'- cCUUGgGUCAg---UCCGGUUCCUGGaAG- -5'
27210 5' -54.8 NC_005832.1 + 21244 0.67 0.825747
Target:  5'- aGAGCCCAGgggaCAGGCCuuuAGGAg---- -3'
miRNA:   3'- cCUUGGGUCa---GUCCGGu--UCCUggaag -5'
27210 5' -54.8 NC_005832.1 + 78637 0.67 0.820452
Target:  5'- aGGACCgGGUCugagaaaccguccacGGGCCugacGGACCUUa -3'
miRNA:   3'- cCUUGGgUCAG---------------UCCGGuu--CCUGGAAg -5'
27210 5' -54.8 NC_005832.1 + 50913 0.67 0.816884
Target:  5'- ---gUCCAGUCAGGCgCGuGGGACCc-- -3'
miRNA:   3'- ccuuGGGUCAGUCCG-GU-UCCUGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.