miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27211 5' -55 NC_005832.1 + 19557 0.65 0.906575
Target:  5'- -aCGGACCuuuCGGUCCUuCAgguuuuGGACCc -3'
miRNA:   3'- gaGUCUGG---GCCAGGA-GUaau---CCUGGc -5'
27211 5' -55 NC_005832.1 + 76120 0.66 0.900145
Target:  5'- --gGGACCUGGag-UCGUUGGGGCUGg -3'
miRNA:   3'- gagUCUGGGCCaggAGUAAUCCUGGC- -5'
27211 5' -55 NC_005832.1 + 5571 0.66 0.893472
Target:  5'- -aCAGGCCCuccgaguggaGGcCCUCucacgGGGACCa -3'
miRNA:   3'- gaGUCUGGG----------CCaGGAGuaa--UCCUGGc -5'
27211 5' -55 NC_005832.1 + 31086 0.66 0.893472
Target:  5'- gUCaAGGCCuacgCGGUCCUCAUggcgucuucUGGaGACCa -3'
miRNA:   3'- gAG-UCUGG----GCCAGGAGUA---------AUC-CUGGc -5'
27211 5' -55 NC_005832.1 + 27037 0.66 0.893472
Target:  5'- cCUCAGGCCCGcgaaacGUCCg---UGGGAgaacCCGg -3'
miRNA:   3'- -GAGUCUGGGC------CAGGaguaAUCCU----GGC- -5'
27211 5' -55 NC_005832.1 + 5337 0.66 0.87941
Target:  5'- -cCAGACCCucgacggcggGGUCgUCGUgcuccAGGGCCu -3'
miRNA:   3'- gaGUCUGGG----------CCAGgAGUAa----UCCUGGc -5'
27211 5' -55 NC_005832.1 + 11271 0.67 0.856603
Target:  5'- cCUCAGcuuCCUGGUCCUCuccuGGuCCc -3'
miRNA:   3'- -GAGUCu--GGGCCAGGAGuaauCCuGGc -5'
27211 5' -55 NC_005832.1 + 54281 0.67 0.856603
Target:  5'- -cCGGACCCgucacguacaGGUCCUCGggcAGGGCg- -3'
miRNA:   3'- gaGUCUGGG----------CCAGGAGUaa-UCCUGgc -5'
27211 5' -55 NC_005832.1 + 66740 0.67 0.848567
Target:  5'- -cCAGGCCCucgaGUCCUCcagccAGGACCu -3'
miRNA:   3'- gaGUCUGGGc---CAGGAGuaa--UCCUGGc -5'
27211 5' -55 NC_005832.1 + 11820 0.67 0.840325
Target:  5'- gCUCuGGCCgGGcUCCUCGUgauGGCCGc -3'
miRNA:   3'- -GAGuCUGGgCC-AGGAGUAaucCUGGC- -5'
27211 5' -55 NC_005832.1 + 54424 0.68 0.796303
Target:  5'- gCUCAGACCCagcaggugagaGGgCCUCAcagacaagAGGACCc -3'
miRNA:   3'- -GAGUCUGGG-----------CCaGGAGUaa------UCCUGGc -5'
27211 5' -55 NC_005832.1 + 78672 0.68 0.774682
Target:  5'- aCUCGGGCaCagucacgcuaaacaCGGUCCUaaugAGGACCGg -3'
miRNA:   3'- -GAGUCUG-G--------------GCCAGGAguaaUCCUGGC- -5'
27211 5' -55 NC_005832.1 + 38460 0.69 0.767956
Target:  5'- -cCGGGCUagccaGGUcCCUCcUUAGGGCCGu -3'
miRNA:   3'- gaGUCUGGg----CCA-GGAGuAAUCCUGGC- -5'
27211 5' -55 NC_005832.1 + 92340 0.69 0.767956
Target:  5'- aCUCuAGGCCC-GUCCUUGacgGGGACCu -3'
miRNA:   3'- -GAG-UCUGGGcCAGGAGUaa-UCCUGGc -5'
27211 5' -55 NC_005832.1 + 29718 0.69 0.758241
Target:  5'- uCUCGGACUgcagGGUCCU---UAGGACCa -3'
miRNA:   3'- -GAGUCUGGg---CCAGGAguaAUCCUGGc -5'
27211 5' -55 NC_005832.1 + 35929 0.69 0.738469
Target:  5'- -aCAGAUUgCGGUCCUCAgcGGGACa- -3'
miRNA:   3'- gaGUCUGG-GCCAGGAGUaaUCCUGgc -5'
27211 5' -55 NC_005832.1 + 6074 0.71 0.645825
Target:  5'- uCUCGGACCUGG-CCUg---GGGACCc -3'
miRNA:   3'- -GAGUCUGGGCCaGGAguaaUCCUGGc -5'
27211 5' -55 NC_005832.1 + 72966 0.71 0.624875
Target:  5'- -aCGGACCCcagGGUCCUC---GGGGCCc -3'
miRNA:   3'- gaGUCUGGG---CCAGGAGuaaUCCUGGc -5'
27211 5' -55 NC_005832.1 + 80824 0.72 0.583109
Target:  5'- cCUCcaGGGCCCuggaggggacggGGUCCUCGUagacgggAGGACCGc -3'
miRNA:   3'- -GAG--UCUGGG------------CCAGGAGUAa------UCCUGGC- -5'
27211 5' -55 NC_005832.1 + 78974 0.72 0.552144
Target:  5'- uUCAGGCCCuacGUCCUCAc--GGACCu -3'
miRNA:   3'- gAGUCUGGGc--CAGGAGUaauCCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.