Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27211 | 5' | -55 | NC_005832.1 | + | 78517 | 1.08 | 0.002936 |
Target: 5'- uCUCAGACCCGGUCCUCAUUAGGACCGu -3' miRNA: 3'- -GAGUCUGGGCCAGGAGUAAUCCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 39072 | 0.78 | 0.296521 |
Target: 5'- uUCAGAUCCGGaUCC-CAggAGGGCCGu -3' miRNA: 3'- gAGUCUGGGCC-AGGaGUaaUCCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 80629 | 0.76 | 0.349838 |
Target: 5'- aCUCAcGACCCGGUCCUCAUccccaaccccucuuGGuCCGa -3' miRNA: 3'- -GAGU-CUGGGCCAGGAGUAau------------CCuGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 100552 | 0.74 | 0.453494 |
Target: 5'- gCUUGGACCUGGUCCUC-UUGGGuuuuuCCu -3' miRNA: 3'- -GAGUCUGGGCCAGGAGuAAUCCu----GGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 74867 | 0.74 | 0.472509 |
Target: 5'- gCUCGGACCUGGggucCCUCuacGGGGCCc -3' miRNA: 3'- -GAGUCUGGGCCa---GGAGuaaUCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 28054 | 0.73 | 0.541929 |
Target: 5'- gCUCAGGCCCuGUCCagGguggugGGGACCa -3' miRNA: 3'- -GAGUCUGGGcCAGGagUaa----UCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 78974 | 0.72 | 0.552144 |
Target: 5'- uUCAGGCCCuacGUCCUCAc--GGACCu -3' miRNA: 3'- gAGUCUGGGc--CAGGAGUaauCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 51000 | 0.72 | 0.552144 |
Target: 5'- --aGGACCCGGUCCUCccugAGGcCCc -3' miRNA: 3'- gagUCUGGGCCAGGAGuaa-UCCuGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 80824 | 0.72 | 0.583109 |
Target: 5'- cCUCcaGGGCCCuggaggggacggGGUCCUCGUagacgggAGGACCGc -3' miRNA: 3'- -GAG--UCUGGG------------CCAGGAGUAa------UCCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 72966 | 0.71 | 0.624875 |
Target: 5'- -aCGGACCCcagGGUCCUC---GGGGCCc -3' miRNA: 3'- gaGUCUGGG---CCAGGAGuaaUCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 6074 | 0.71 | 0.645825 |
Target: 5'- uCUCGGACCUGG-CCUg---GGGACCc -3' miRNA: 3'- -GAGUCUGGGCCaGGAguaaUCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 35929 | 0.69 | 0.738469 |
Target: 5'- -aCAGAUUgCGGUCCUCAgcGGGACa- -3' miRNA: 3'- gaGUCUGG-GCCAGGAGUaaUCCUGgc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 29718 | 0.69 | 0.758241 |
Target: 5'- uCUCGGACUgcagGGUCCU---UAGGACCa -3' miRNA: 3'- -GAGUCUGGg---CCAGGAguaAUCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 92340 | 0.69 | 0.767956 |
Target: 5'- aCUCuAGGCCC-GUCCUUGacgGGGACCu -3' miRNA: 3'- -GAG-UCUGGGcCAGGAGUaa-UCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 38460 | 0.69 | 0.767956 |
Target: 5'- -cCGGGCUagccaGGUcCCUCcUUAGGGCCGu -3' miRNA: 3'- gaGUCUGGg----CCA-GGAGuAAUCCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 78672 | 0.68 | 0.774682 |
Target: 5'- aCUCGGGCaCagucacgcuaaacaCGGUCCUaaugAGGACCGg -3' miRNA: 3'- -GAGUCUG-G--------------GCCAGGAguaaUCCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 54424 | 0.68 | 0.796303 |
Target: 5'- gCUCAGACCCagcaggugagaGGgCCUCAcagacaagAGGACCc -3' miRNA: 3'- -GAGUCUGGG-----------CCaGGAGUaa------UCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 11820 | 0.67 | 0.840325 |
Target: 5'- gCUCuGGCCgGGcUCCUCGUgauGGCCGc -3' miRNA: 3'- -GAGuCUGGgCC-AGGAGUAaucCUGGC- -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 66740 | 0.67 | 0.848567 |
Target: 5'- -cCAGGCCCucgaGUCCUCcagccAGGACCu -3' miRNA: 3'- gaGUCUGGGc---CAGGAGuaa--UCCUGGc -5' |
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27211 | 5' | -55 | NC_005832.1 | + | 11271 | 0.67 | 0.856603 |
Target: 5'- cCUCAGcuuCCUGGUCCUCuccuGGuCCc -3' miRNA: 3'- -GAGUCu--GGGCCAGGAGuaauCCuGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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