miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27213 5' -56.2 NC_005832.1 + 87130 0.66 0.824416
Target:  5'- --cCCUGAGGGGA-UGGuGUUuucGGAAGa -3'
miRNA:   3'- cuaGGACUCCCCUcGCCuCGA---UCUUC- -5'
27213 5' -56.2 NC_005832.1 + 38706 0.66 0.815557
Target:  5'- -----aGAGGGuuGCGGAGCUcgAGGAGg -3'
miRNA:   3'- cuaggaCUCCCcuCGCCUCGA--UCUUC- -5'
27213 5' -56.2 NC_005832.1 + 44799 0.66 0.806521
Target:  5'- aGGUCCaggGAGGGGGGCauaaagaucggGGAGaUGGAGc -3'
miRNA:   3'- -CUAGGa--CUCCCCUCG-----------CCUCgAUCUUc -5'
27213 5' -56.2 NC_005832.1 + 66382 0.67 0.759008
Target:  5'- --cCUUGAGGGGAugGGGGCUGGcGGc -3'
miRNA:   3'- cuaGGACUCCCCUcgCCUCGAUCuUC- -5'
27213 5' -56.2 NC_005832.1 + 20413 0.67 0.739096
Target:  5'- --gCCUG-GGGuuGCGGAcGCUGGggGu -3'
miRNA:   3'- cuaGGACuCCCcuCGCCU-CGAUCuuC- -5'
27213 5' -56.2 NC_005832.1 + 67648 0.69 0.645741
Target:  5'- cGGUCCgugacaGGGGGGAGggacagaaGGGGCaUGGAGGg -3'
miRNA:   3'- -CUAGGa-----CUCCCCUCg-------CCUCG-AUCUUC- -5'
27213 5' -56.2 NC_005832.1 + 9208 0.69 0.635185
Target:  5'- cGAcCCUGAGGGagauGAG-GGAGCUGGcGGa -3'
miRNA:   3'- -CUaGGACUCCC----CUCgCCUCGAUCuUC- -5'
27213 5' -56.2 NC_005832.1 + 67460 0.7 0.593021
Target:  5'- cGggUCUGGGGGGAGCGGu-CUuGAGGa -3'
miRNA:   3'- -CuaGGACUCCCCUCGCCucGAuCUUC- -5'
27213 5' -56.2 NC_005832.1 + 7217 0.7 0.561688
Target:  5'- uAUCCUGAaGGGAGCGGAGgaAcacccgugcGAGGa -3'
miRNA:   3'- cUAGGACUcCCCUCGCCUCgaU---------CUUC- -5'
27213 5' -56.2 NC_005832.1 + 1444 0.71 0.530822
Target:  5'- gGggCCUGuggcuGGGGAGgGGAcGCUGGAGu -3'
miRNA:   3'- -CuaGGACu----CCCCUCgCCU-CGAUCUUc -5'
27213 5' -56.2 NC_005832.1 + 105 0.71 0.500594
Target:  5'- gGAUCUgguuUGGGGGGAGUGGGGggaucugguUUGGGAGg -3'
miRNA:   3'- -CUAGG----ACUCCCCUCGCCUC---------GAUCUUC- -5'
27213 5' -56.2 NC_005832.1 + 11509 0.74 0.363283
Target:  5'- aGUCCUGgccAGGGGAGCGGcGCUccucAGAAa -3'
miRNA:   3'- cUAGGAC---UCCCCUCGCCuCGA----UCUUc -5'
27213 5' -56.2 NC_005832.1 + 79434 1.09 0.001722
Target:  5'- uGAUCCUGAGGGGAGCGGAGCUAGAAGa -3'
miRNA:   3'- -CUAGGACUCCCCUCGCCUCGAUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.