miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27214 3' -58.3 NC_005832.1 + 2984 0.66 0.727271
Target:  5'- gUACGaCCUGgcGGCACCaacccauuCCUGGaCACCg -3'
miRNA:   3'- -AUGC-GGACauUCGUGG--------GGGUC-GUGGg -5'
27214 3' -58.3 NC_005832.1 + 78584 0.66 0.727271
Target:  5'- gUACGagaUUGUGgacucugcGGCGCCCaCCGGCucguGCCCc -3'
miRNA:   3'- -AUGCg--GACAU--------UCGUGGG-GGUCG----UGGG- -5'
27214 3' -58.3 NC_005832.1 + 50759 0.66 0.727271
Target:  5'- aGCGCCcGUugcucccuuGuCGCCCCUGGguCCCa -3'
miRNA:   3'- aUGCGGaCAuu-------C-GUGGGGGUCguGGG- -5'
27214 3' -58.3 NC_005832.1 + 105430 0.66 0.717174
Target:  5'- uUAU-CCUGUGAGCAgauUCUaCCAGCGCCUu -3'
miRNA:   3'- -AUGcGGACAUUCGU---GGG-GGUCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 21098 0.66 0.707002
Target:  5'- gGgGCCcGUAGGgACgCCCCGGCcguCCUg -3'
miRNA:   3'- aUgCGGaCAUUCgUG-GGGGUCGu--GGG- -5'
27214 3' -58.3 NC_005832.1 + 87850 0.66 0.707002
Target:  5'- gACGCCau---GUACCCUCAG-ACCCu -3'
miRNA:   3'- aUGCGGacauuCGUGGGGGUCgUGGG- -5'
27214 3' -58.3 NC_005832.1 + 75986 0.66 0.707002
Target:  5'- cUugGCCgu--GGC-CCCCaacgccaaCAGCGCCCu -3'
miRNA:   3'- -AugCGGacauUCGuGGGG--------GUCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 76101 0.66 0.686468
Target:  5'- cACgGCCaagagGUGAGCguugcGCaCCCC-GCACCCg -3'
miRNA:   3'- aUG-CGGa----CAUUCG-----UG-GGGGuCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 9882 0.66 0.686468
Target:  5'- --aGCCUcacGUGAGCcacgGCCUCCGcggccgacGCGCCCg -3'
miRNA:   3'- augCGGA---CAUUCG----UGGGGGU--------CGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 45831 0.67 0.665748
Target:  5'- gACgGCCaUGUAcucuGgACCCCCgucGGUACCCg -3'
miRNA:   3'- aUG-CGG-ACAUu---CgUGGGGG---UCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 48177 0.67 0.665748
Target:  5'- gACGUCUG-AGGC-CUUucgggcgucgaaCCAGCACCCg -3'
miRNA:   3'- aUGCGGACaUUCGuGGG------------GGUCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 6136 0.67 0.665748
Target:  5'- cACuUCUgcGUGAGgACCCCUGGCGCUCa -3'
miRNA:   3'- aUGcGGA--CAUUCgUGGGGGUCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 7315 0.67 0.655341
Target:  5'- --aGgCUGUGGGUGUCCUguGCGCCCa -3'
miRNA:   3'- augCgGACAUUCGUGGGGguCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 53976 0.67 0.624038
Target:  5'- -gUGCC-GUGAGCgggaggugguuuGCCuCCCAGgACCCu -3'
miRNA:   3'- auGCGGaCAUUCG------------UGG-GGGUCgUGGG- -5'
27214 3' -58.3 NC_005832.1 + 62168 0.67 0.613605
Target:  5'- aACGCCcugaUGUucuGCuuCCCCCA-CACCCu -3'
miRNA:   3'- aUGCGG----ACAuu-CGu-GGGGGUcGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 41553 0.68 0.603187
Target:  5'- -cCGCCgucagGgaGGCGCCCUCGGUagucauGCCCc -3'
miRNA:   3'- auGCGGa----CauUCGUGGGGGUCG------UGGG- -5'
27214 3' -58.3 NC_005832.1 + 13781 0.68 0.603187
Target:  5'- uUAU-CCUGUAGGCgGCCuCCCuGCACgCCg -3'
miRNA:   3'- -AUGcGGACAUUCG-UGG-GGGuCGUG-GG- -5'
27214 3' -58.3 NC_005832.1 + 29158 0.68 0.592791
Target:  5'- uUugGUacaUGUGAGCGuCCUugcgCCAGCACCUc -3'
miRNA:   3'- -AugCGg--ACAUUCGU-GGG----GGUCGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 1021 0.68 0.592791
Target:  5'- cUACGCCgggGgcugcAGCGCCUUCA-CACCCa -3'
miRNA:   3'- -AUGCGGa--Cau---UCGUGGGGGUcGUGGG- -5'
27214 3' -58.3 NC_005832.1 + 20265 0.68 0.572097
Target:  5'- gACGCCaaaccAGGacuCACCCCCAGCGUCCg -3'
miRNA:   3'- aUGCGGaca--UUC---GUGGGGGUCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.