miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27214 5' -56.4 NC_005832.1 + 17169 0.66 0.815557
Target:  5'- aCAGcGGCCuggcCCUGCcaguugucucccUCCCCuacAACGAGa -3'
miRNA:   3'- aGUC-CCGGuu--GGACG------------AGGGG---UUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 47892 0.66 0.815557
Target:  5'- -aGGGGCUAcguCgUGCagcaguaCCCCAACGAGa -3'
miRNA:   3'- agUCCCGGUu--GgACGa------GGGGUUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 9618 0.66 0.806521
Target:  5'- cCAGGGCCGACg-GCaagacCCUCAACGc- -3'
miRNA:   3'- aGUCCCGGUUGgaCGa----GGGGUUGUuc -5'
27214 5' -56.4 NC_005832.1 + 65449 0.66 0.806521
Target:  5'- gCAGGGCCuccAgCUGCgCCCUGACc-- -3'
miRNA:   3'- aGUCCCGGu--UgGACGaGGGGUUGuuc -5'
27214 5' -56.4 NC_005832.1 + 40361 0.66 0.797316
Target:  5'- gCAGGGagaCGucGCgUGCUCCCUAuuuGCGGGc -3'
miRNA:   3'- aGUCCCg--GU--UGgACGAGGGGU---UGUUC- -5'
27214 5' -56.4 NC_005832.1 + 10326 0.66 0.797316
Target:  5'- cCucGGCCAccacCCUGgaCCCCAGCAGc -3'
miRNA:   3'- aGucCCGGUu---GGACgaGGGGUUGUUc -5'
27214 5' -56.4 NC_005832.1 + 27540 0.66 0.797316
Target:  5'- cCAGGGagAGCCUGCUCgaagacaCCuuCGAGg -3'
miRNA:   3'- aGUCCCggUUGGACGAGg------GGuuGUUC- -5'
27214 5' -56.4 NC_005832.1 + 20832 0.66 0.797316
Target:  5'- cCAGGGCgGccucguACuCUGCUCCCgAuccggaagGCAGGg -3'
miRNA:   3'- aGUCCCGgU------UG-GACGAGGGgU--------UGUUC- -5'
27214 5' -56.4 NC_005832.1 + 38002 0.66 0.796387
Target:  5'- uUCAGGGUuacgcaauugccgCAGCCUgGCUUUUCAACGAu -3'
miRNA:   3'- -AGUCCCG-------------GUUGGA-CGAGGGGUUGUUc -5'
27214 5' -56.4 NC_005832.1 + 74574 0.66 0.778441
Target:  5'- cCAGGGCaaacaCGGCgUGUUCCgaguCCGACGAGc -3'
miRNA:   3'- aGUCCCG-----GUUGgACGAGG----GGUUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 63248 0.67 0.768789
Target:  5'- uUCAGGGUCuuUUUgcGCUCUCCGAUGAGc -3'
miRNA:   3'- -AGUCCCGGuuGGA--CGAGGGGUUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 19883 0.67 0.768789
Target:  5'- cUCGGGGggAACCUGCcUCCCCca-AAGc -3'
miRNA:   3'- -AGUCCCggUUGGACG-AGGGGuugUUC- -5'
27214 5' -56.4 NC_005832.1 + 48251 0.67 0.768789
Target:  5'- gCAGGGcCCAGCCaGUcCUCCAGCu-- -3'
miRNA:   3'- aGUCCC-GGUUGGaCGaGGGGUUGuuc -5'
27214 5' -56.4 NC_005832.1 + 75809 0.67 0.759008
Target:  5'- gCuGGGCCAgguACCUGCaaaagcacaggaUCCCCuuCGAu -3'
miRNA:   3'- aGuCCCGGU---UGGACG------------AGGGGuuGUUc -5'
27214 5' -56.4 NC_005832.1 + 71160 0.67 0.749107
Target:  5'- -aGGGGCUGGagagGCUCUCCGGCGGGc -3'
miRNA:   3'- agUCCCGGUUgga-CGAGGGGUUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 67661 0.67 0.749107
Target:  5'- gCAGGGCCcaAACC-GgUCCgUGACAGGg -3'
miRNA:   3'- aGUCCCGG--UUGGaCgAGGgGUUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 63999 0.67 0.739096
Target:  5'- -gAGGGCCcugauACCcgGCUCCCUGAUg-- -3'
miRNA:   3'- agUCCCGGu----UGGa-CGAGGGGUUGuuc -5'
27214 5' -56.4 NC_005832.1 + 91958 0.67 0.738089
Target:  5'- --uGGGCCAggagcagccuaaaACCgGCUCCCgagGACAGGg -3'
miRNA:   3'- aguCCCGGU-------------UGGaCGAGGGg--UUGUUC- -5'
27214 5' -56.4 NC_005832.1 + 54511 0.67 0.715712
Target:  5'- -uGGGGCCGAcCCUGUccaccgugcuguccUCCCCGcCGAa -3'
miRNA:   3'- agUCCCGGUU-GGACG--------------AGGGGUuGUUc -5'
27214 5' -56.4 NC_005832.1 + 76301 0.68 0.70851
Target:  5'- cCAGGGCCAaucccuuaACCUcuuuUUCCCCAugggagcggACAAGa -3'
miRNA:   3'- aGUCCCGGU--------UGGAc---GAGGGGU---------UGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.