miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27215 5' -57.9 NC_005832.1 + 23599 0.66 0.765896
Target:  5'- -uUGGCCUugAaggACUuuaggucgGGCAGGGCGGc -3'
miRNA:   3'- cuGCCGGAugUgg-UGA--------CCGUUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 54666 0.66 0.756265
Target:  5'- --gGGCCUgaggaGCAuCCugUcGGcCAGGGCGGc -3'
miRNA:   3'- cugCCGGA-----UGU-GGugA-CC-GUUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 56170 0.66 0.756265
Target:  5'- -cCGGCCUcUACCAg-GGCAAGGgagaucCGGg -3'
miRNA:   3'- cuGCCGGAuGUGGUgaCCGUUCC------GCC- -5'
27215 5' -57.9 NC_005832.1 + 91294 0.66 0.746522
Target:  5'- cGugGGCUUuuGCCugUGGCAgcAGacuucggggucaGCGGa -3'
miRNA:   3'- -CugCCGGAugUGGugACCGU--UC------------CGCC- -5'
27215 5' -57.9 NC_005832.1 + 52840 0.66 0.746522
Target:  5'- cGGCGGCCgcCGCCGCUcacucuguGG--GGGUGGu -3'
miRNA:   3'- -CUGCCGGauGUGGUGA--------CCguUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 67035 0.66 0.736676
Target:  5'- cGGCGGCCgugGCgaggGCCGCgGGCGuaaagAGGCc- -3'
miRNA:   3'- -CUGCCGGa--UG----UGGUGaCCGU-----UCCGcc -5'
27215 5' -57.9 NC_005832.1 + 18090 0.66 0.736676
Target:  5'- --gGGCgCUGCugcuGCUGCUGGaCAGGGCGu -3'
miRNA:   3'- cugCCG-GAUG----UGGUGACC-GUUCCGCc -5'
27215 5' -57.9 NC_005832.1 + 9370 0.66 0.726736
Target:  5'- uACGGCCgucgUACACC-UUGGCGuuugcuccccGGGCGu -3'
miRNA:   3'- cUGCCGG----AUGUGGuGACCGU----------UCCGCc -5'
27215 5' -57.9 NC_005832.1 + 68061 0.67 0.696454
Target:  5'- gGGCGGaggcauCCUgAUACaCGCUGGCAAGGUa- -3'
miRNA:   3'- -CUGCC------GGA-UGUG-GUGACCGUUCCGcc -5'
27215 5' -57.9 NC_005832.1 + 97232 0.67 0.696454
Target:  5'- cGGCGGCCUGCuCCAg-GGCGucugAGGuCGa -3'
miRNA:   3'- -CUGCCGGAUGuGGUgaCCGU----UCC-GCc -5'
27215 5' -57.9 NC_005832.1 + 52459 0.67 0.686238
Target:  5'- cGGgGGUCUGCGCCcCUagaaGGgAGGGUGGu -3'
miRNA:   3'- -CUgCCGGAUGUGGuGA----CCgUUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 21318 0.67 0.684189
Target:  5'- gGACGGUagaauugucggACGCCACUauccgaGGCucGGCGGu -3'
miRNA:   3'- -CUGCCGga---------UGUGGUGA------CCGuuCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 10476 0.67 0.675975
Target:  5'- --gGGCCUACauaucccuGCUGCUGGggucCAGGGUGGu -3'
miRNA:   3'- cugCCGGAUG--------UGGUGACC----GUUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 104016 0.67 0.665676
Target:  5'- cAUGGCCUgugcccaccuguACACCAUgcugUGGgAAGGCGu -3'
miRNA:   3'- cUGCCGGA------------UGUGGUG----ACCgUUCCGCc -5'
27215 5' -57.9 NC_005832.1 + 38597 0.68 0.635682
Target:  5'- gGACGGCCcuaaggagggaccugGCuaGCC-CgGGCAGGGUGGa -3'
miRNA:   3'- -CUGCCGGa--------------UG--UGGuGaCCGUUCCGCC- -5'
27215 5' -57.9 NC_005832.1 + 24451 0.68 0.624287
Target:  5'- -cUGGCCacagACGCCGgaGGCAGGGguaGGa -3'
miRNA:   3'- cuGCCGGa---UGUGGUgaCCGUUCCg--CC- -5'
27215 5' -57.9 NC_005832.1 + 48137 0.68 0.624287
Target:  5'- --gGGcCCUGCACUGgUGGCA-GGCGa -3'
miRNA:   3'- cugCC-GGAUGUGGUgACCGUuCCGCc -5'
27215 5' -57.9 NC_005832.1 + 9905 0.68 0.623252
Target:  5'- cGCGGCCgacGCGCCcgacgaaGCgGGCAGGGgacCGGg -3'
miRNA:   3'- cUGCCGGa--UGUGG-------UGaCCGUUCC---GCC- -5'
27215 5' -57.9 NC_005832.1 + 19918 0.68 0.613935
Target:  5'- uGGCGGCCU-CGuCCACgGGCGccGGgGGa -3'
miRNA:   3'- -CUGCCGGAuGU-GGUGaCCGUu-CCgCC- -5'
27215 5' -57.9 NC_005832.1 + 12519 0.68 0.603597
Target:  5'- uGACuGCCUccaaGCACgACgUGGaCGGGGCGGc -3'
miRNA:   3'- -CUGcCGGA----UGUGgUG-ACC-GUUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.