miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27216 3' -58.6 NC_005832.1 + 85546 0.66 0.762662
Target:  5'- --cGCGUCUUCGUCaAUGACcuGCuCUCCu -3'
miRNA:   3'- ggaCGCAGGGGCAG-UACUG--CG-GAGGu -5'
27216 3' -58.6 NC_005832.1 + 16809 0.66 0.762662
Target:  5'- aCCUGCuccacgaccauGUCCCUGacugugcugcUCAUGGCcuGCCUCUc -3'
miRNA:   3'- -GGACG-----------CAGGGGC----------AGUACUG--CGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 75996 0.66 0.752174
Target:  5'- aCCUcCGaaaauuaUCCCCGUCAgccucacCGCCUCCu -3'
miRNA:   3'- -GGAcGC-------AGGGGCAGUacu----GCGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 5681 0.66 0.743498
Target:  5'- gCCUGUGcaccgUCCCGUCccu-CGUCUCCAc -3'
miRNA:   3'- -GGACGCa----GGGGCAGuacuGCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 27876 0.66 0.742529
Target:  5'- aCUGCGUCCCCuccuagcacGUCcuucuUGACGUccaugagCUCCu -3'
miRNA:   3'- gGACGCAGGGG---------CAGu----ACUGCG-------GAGGu -5'
27216 3' -58.6 NC_005832.1 + 5642 0.66 0.733766
Target:  5'- cCCUGCccUCCC-UCAUcauCGCCUCCAa -3'
miRNA:   3'- -GGACGcaGGGGcAGUAcu-GCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 5466 0.66 0.713054
Target:  5'- aCCUGacuGUgCCCGUCAUGgucacccccuucaACGUCUCUu -3'
miRNA:   3'- -GGACg--CAgGGGCAGUAC-------------UGCGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 36658 0.67 0.694052
Target:  5'- cCCUGUGgcCCCCGgcccuggCGUacGcCGCCUCCGu -3'
miRNA:   3'- -GGACGCa-GGGGCa------GUA--CuGCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 75253 0.67 0.694052
Target:  5'- gCUGgGUCCCCucacGUCGUcccaGugGCCcgCCAc -3'
miRNA:   3'- gGACgCAGGGG----CAGUA----CugCGGa-GGU- -5'
27216 3' -58.6 NC_005832.1 + 5718 0.67 0.683972
Target:  5'- uCCaUGUgGUCCCCGUgAgaGgGCCUCCAc -3'
miRNA:   3'- -GG-ACG-CAGGGGCAgUacUgCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 60007 0.67 0.667759
Target:  5'- gCUaCGUCUCUGUCAUGACaGCCacugcgcacuuuuacUCCAa -3'
miRNA:   3'- gGAcGCAGGGGCAGUACUG-CGG---------------AGGU- -5'
27216 3' -58.6 NC_005832.1 + 95055 0.67 0.653512
Target:  5'- aCCUGCGcUUCUCGgagacggaCAUGAgcacCGCCUCCu -3'
miRNA:   3'- -GGACGC-AGGGGCa-------GUACU----GCGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 91633 0.67 0.653512
Target:  5'- uUUGcCGUCCCCGcCAc--CGCCUCCc -3'
miRNA:   3'- gGAC-GCAGGGGCaGUacuGCGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 18663 0.68 0.601493
Target:  5'- gCUGCacCCUCGUCAUGGCGUCUggaggcaCCAg -3'
miRNA:   3'- gGACGcaGGGGCAGUACUGCGGA-------GGU- -5'
27216 3' -58.6 NC_005832.1 + 11171 0.69 0.562053
Target:  5'- aCCUGuCGUaCCUgGcCAUGAUGgCCUCCGc -3'
miRNA:   3'- -GGAC-GCA-GGGgCaGUACUGC-GGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 43486 0.7 0.512608
Target:  5'- uCCU-CGUCCCCGUCG-GAcuuucucccuCGCcCUCCAg -3'
miRNA:   3'- -GGAcGCAGGGGCAGUaCU----------GCG-GAGGU- -5'
27216 3' -58.6 NC_005832.1 + 18873 0.7 0.482861
Target:  5'- uCCUGaaaagaGUCCUcuuCGUCGUGGucauaguCGCCUCCAa -3'
miRNA:   3'- -GGACg-----CAGGG---GCAGUACU-------GCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 6620 0.71 0.465046
Target:  5'- aCCc-CGUCCUCGUCAUccGcCGCCUCCGc -3'
miRNA:   3'- -GGacGCAGGGGCAGUA--CuGCGGAGGU- -5'
27216 3' -58.6 NC_005832.1 + 5188 0.72 0.402575
Target:  5'- aCCgGCaUCCUgGUCAUGACcaGCCUCCu -3'
miRNA:   3'- -GGaCGcAGGGgCAGUACUG--CGGAGGu -5'
27216 3' -58.6 NC_005832.1 + 80164 1.09 0.001149
Target:  5'- uCCUGCGUCCCCGUCAUGACGCCUCCAu -3'
miRNA:   3'- -GGACGCAGGGGCAGUACUGCGGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.