Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27217 | 5' | -57 | NC_005832.1 | + | 10788 | 0.67 | 0.733166 |
Target: 5'- -aGGuGGGGaUCggcuGCGGAGGCCaGGAAc -3' miRNA: 3'- gaCCuCCCCaAG----UGCCUUCGGcUCUU- -5' |
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27217 | 5' | -57 | NC_005832.1 | + | 6324 | 0.67 | 0.712873 |
Target: 5'- -cGGAGGGGacgcggCGgGGAAGCUGGuGGAu -3' miRNA: 3'- gaCCUCCCCaa----GUgCCUUCGGCU-CUU- -5' |
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27217 | 5' | -57 | NC_005832.1 | + | 78336 | 0.69 | 0.618034 |
Target: 5'- -aGGGgcaugauGGGGUUCGCGGcGGCCGugcAGGAc -3' miRNA: 3'- gaCCU-------CCCCAAGUGCCuUCGGC---UCUU- -5' |
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27217 | 5' | -57 | NC_005832.1 | + | 105013 | 0.69 | 0.587689 |
Target: 5'- -cGGAGGGGUguuccacucCACGGggGUuuUGGGAc -3' miRNA: 3'- gaCCUCCCCAa--------GUGCCuuCG--GCUCUu -5' |
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27217 | 5' | -57 | NC_005832.1 | + | 90557 | 0.7 | 0.546335 |
Target: 5'- -gGGAGGGGUgccugagggACGGGAGgcCCGAGGAc -3' miRNA: 3'- gaCCUCCCCAag-------UGCCUUC--GGCUCUU- -5' |
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27217 | 5' | -57 | NC_005832.1 | + | 80712 | 1.06 | 0.002146 |
Target: 5'- cCUGGAGGGGUUCACGGAAGCCGAGAAa -3' miRNA: 3'- -GACCUCCCCAAGUGCCUUCGGCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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