miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27218 3' -53.9 NC_005832.1 + 17869 0.67 0.845385
Target:  5'- uGCUGCUGaacaGGGCGuu-GCUGCUGcUGCu -3'
miRNA:   3'- -UGACGAC----CUCGUgauUGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 18174 0.67 0.845385
Target:  5'- gACUGCUGuccuuGAGCAggacGCUGCUGuUGCu -3'
miRNA:   3'- -UGACGAC-----CUCGUgau-UGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 15812 0.67 0.840256
Target:  5'- aGCUGCcgGGAgagGCGCUccaagaggcccugucGAUacucagcuucuUGCUGGUGCa -3'
miRNA:   3'- -UGACGa-CCU---CGUGA---------------UUG-----------ACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 98442 0.7 0.709751
Target:  5'- uGCUGCUGGgcucAGaCugUGACUugcGCUGGUauaGCa -3'
miRNA:   3'- -UGACGACC----UC-GugAUUGA---CGACCA---CG- -5'
27218 3' -53.9 NC_005832.1 + 17902 0.7 0.699162
Target:  5'- uGCUGCUGGAcaGgGCgucGCUGCUGcUGCn -3'
miRNA:   3'- -UGACGACCU--CgUGau-UGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 48121 0.72 0.548845
Target:  5'- --aGCUGGAGgACUGGCUGggcccugcaCUGGUGg -3'
miRNA:   3'- ugaCGACCUCgUGAUUGAC---------GACCACg -5'
27218 3' -53.9 NC_005832.1 + 17932 0.74 0.447458
Target:  5'- uGCUGCUGGAcaGgGCguuGCUGCUGcUGCa -3'
miRNA:   3'- -UGACGACCU--CgUGau-UGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 18057 0.76 0.340909
Target:  5'- uGCUGCUGcacaGGGCGCU-GCUGCUGcUGCa -3'
miRNA:   3'- -UGACGAC----CUCGUGAuUGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 18015 0.76 0.340909
Target:  5'- uGCUGCUGcacaGGGCGCU-GCUGCUGcUGCa -3'
miRNA:   3'- -UGACGAC----CUCGUGAuUGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 17973 0.76 0.340909
Target:  5'- uGCUGCUGcacaGGGCGCU-GCUGCUGcUGCa -3'
miRNA:   3'- -UGACGAC----CUCGUGAuUGACGACcACG- -5'
27218 3' -53.9 NC_005832.1 + 82426 0.78 0.287775
Target:  5'- -gUGCUGGuGCAgCUGG-UGCUGGUGCa -3'
miRNA:   3'- ugACGACCuCGU-GAUUgACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 82308 0.94 0.024496
Target:  5'- ---nCUGGAGCACUAACUGCUGGUGCa -3'
miRNA:   3'- ugacGACCUCGUGAUUGACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 82471 1.06 0.004119
Target:  5'- -gUGCUGGAGCACUAACUGCUGGUGCa -3'
miRNA:   3'- ugACGACCUCGUGAUUGACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 82396 1.06 0.004119
Target:  5'- -gUGCUGGAGCACUAACUGCUGGUGCa -3'
miRNA:   3'- ugACGACCUCGUGAUUGACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 82351 1.06 0.004119
Target:  5'- -gUGCUGGAGCACUAACUGCUGGUGCa -3'
miRNA:   3'- ugACGACCUCGUGAUUGACGACCACG- -5'
27218 3' -53.9 NC_005832.1 + 82283 1.11 0.001658
Target:  5'- aACUGCUGGAGCACUAACUGCUGGUGCu -3'
miRNA:   3'- -UGACGACCUCGUGAUUGACGACCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.