Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 17924 | 0.66 | 0.632375 |
|
Target: 5'- gCUGCUGcUGCuGCUGGacagggcguugcUGCUGcUGCAc -3' miRNA: 3'- -GACGACcACGuCGACC------------ACGACcACGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 32923 | 0.67 | 0.611328 |
|
Target: 5'- -cGgUGGUGCAGUcgUGGUGcCUGGUc-- -3' miRNA: 3'- gaCgACCACGUCG--ACCAC-GACCAcgu -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 17888 | 0.67 | 0.600825 |
|
Target: 5'- gCUGCUGcUGCuGCUGcUGCUGGacaggGCGu -3' miRNA: 3'- -GACGACcACGuCGACcACGACCa----CGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 48113 | 0.69 | 0.45945 |
|
Target: 5'- -gGCUGGUG-AGCUGGaggacugGCUGGgcccUGCAc -3' miRNA: 3'- gaCGACCACgUCGACCa------CGACC----ACGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82284 | 0.8 | 0.096403 |
|
Target: 5'- aCUGCUGGaGCAcuaacuGCUGGUGCUGGaGCAc -3' miRNA: 3'- -GACGACCaCGU------CGACCACGACCaCGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82485 | 0.89 | 0.019639 |
|
Target: 5'- aCUGCUGGUGCAGCUGGUGCUGuaucggccuguuGUGUg -3' miRNA: 3'- -GACGACCACGUCGACCACGAC------------CACGu -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82441 | 1.06 | 0.001234 |
|
Target: 5'- gUGCUGGUGCAGCUGGUGCUGGUGCAg -3' miRNA: 3'- gACGACCACGUCGACCACGACCACGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82410 | 1.09 | 0.000781 |
|
Target: 5'- aCUGCUGGUGCAGCUGGUGCUGGUGCAg -3' miRNA: 3'- -GACGACCACGUCGACCACGACCACGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82365 | 1.09 | 0.000781 |
|
Target: 5'- aCUGCUGGUGCAGCUGGUGCUGGUGCAg -3' miRNA: 3'- -GACGACCACGUCGACCACGACCACGU- -5' |
|||||||
| 27218 | 5' | -58.8 | NC_005832.1 | + | 82320 | 1.09 | 0.000781 |
|
Target: 5'- aCUGCUGGUGCAGCUGGUGCUGGUGCAg -3' miRNA: 3'- -GACGACCACGUCGACCACGACCACGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home