Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27219 | 3' | -53.4 | NC_005832.1 | + | 4275 | 0.69 | 0.763128 |
Target: 5'- uGCACcgUGACUGCcgUGGUGUuuGCugUGGUGUc -3' miRNA: 3'- -CGUG--AUUGACG--ACCACGu-CG--ACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 9313 | 0.7 | 0.742841 |
Target: 5'- -aGCUGAC-GgUGG-GCAGgaGGUGCg -3' miRNA: 3'- cgUGAUUGaCgACCaCGUCgaCCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 16653 | 0.75 | 0.468877 |
Target: 5'- aGUACU-ACUcGCUGGUGCAGCccUGGUa- -3' miRNA: 3'- -CGUGAuUGA-CGACCACGUCG--ACCAcg -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 17887 | 0.68 | 0.829499 |
Target: 5'- -uGCUGcuGCUGCUGcUGCuGCUGGacaggGCg -3' miRNA: 3'- cgUGAU--UGACGACcACGuCGACCa----CG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 17919 | 0.68 | 0.829499 |
Target: 5'- uCGCU-GCUGCUGcUGCuGCUGGacaggGCg -3' miRNA: 3'- cGUGAuUGACGACcACGuCGACCa----CG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 17986 | 0.67 | 0.878756 |
Target: 5'- gGCGCU-GCUGCUGcUGCAcagggcguugcuGCUGcUGCa -3' miRNA: 3'- -CGUGAuUGACGACcACGU------------CGACcACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 18028 | 0.67 | 0.863245 |
Target: 5'- gGCGCU-GCUGCUGcUGCAcagggcGCUGcUGCu -3' miRNA: 3'- -CGUGAuUGACGACcACGU------CGACcACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 18084 | 0.68 | 0.811391 |
Target: 5'- uGCACagggcGCUGCUGcUGCuGCUGGacaggGCg -3' miRNA: 3'- -CGUGau---UGACGACcACGuCGACCa----CG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 32745 | 0.66 | 0.900173 |
Target: 5'- ----gGACgagGCggUGGUGCGGUcgUGGUGCu -3' miRNA: 3'- cgugaUUGa--CG--ACCACGUCG--ACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 32931 | 0.67 | 0.878756 |
Target: 5'- ----gGACgagGCggUGGUGCAGUcgUGGUGCc -3' miRNA: 3'- cgugaUUGa--CG--ACCACGUCG--ACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 62228 | 0.66 | 0.9068 |
Target: 5'- cCACUGGaacCUGCUGGUucuCAGgaGGUGg -3' miRNA: 3'- cGUGAUU---GACGACCAc--GUCgaCCACg -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82277 | 0.92 | 0.040359 |
Target: 5'- gGCACUAACUGCUGGaGCAcuaacuGCUGGUGCu -3' miRNA: 3'- -CGUGAUUGACGACCaCGU------CGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82313 | 1.14 | 0.001286 |
Target: 5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3' miRNA: 3'- -CGUGAUUGACGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82338 | 0.74 | 0.51947 |
Target: 5'- ---------nCUGGUGCAGCUGGUGCu -3' miRNA: 3'- cgugauugacGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82358 | 1.14 | 0.001286 |
Target: 5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3' miRNA: 3'- -CGUGAUUGACGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82383 | 0.74 | 0.51947 |
Target: 5'- ---------nCUGGUGCAGCUGGUGCu -3' miRNA: 3'- cgugauugacGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82403 | 1.14 | 0.001286 |
Target: 5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3' miRNA: 3'- -CGUGAUUGACGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82433 | 0.93 | 0.035966 |
Target: 5'- uGCAgCUGG-UGCUGGUGCAGCUGGUGCu -3' miRNA: 3'- -CGU-GAUUgACGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82458 | 0.74 | 0.51947 |
Target: 5'- ---------nCUGGUGCAGCUGGUGCu -3' miRNA: 3'- cgugauugacGACCACGUCGACCACG- -5' |
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27219 | 3' | -53.4 | NC_005832.1 | + | 82478 | 1.14 | 0.001286 |
Target: 5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3' miRNA: 3'- -CGUGAUUGACGACCACGUCGACCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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