Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2722 | 3' | -45.7 | NC_001491.2 | + | 142533 | 1.11 | 0.021111 |
Target: 5'- gCUAAAAUACGGUUACCCGGCACAUACu -3' miRNA: 3'- -GAUUUUAUGCCAAUGGGCCGUGUAUG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 20082 | 0.7 | 0.998052 |
Target: 5'- ------cGCGGgaacGCCCGGCACGgcugggGCg -3' miRNA: 3'- gauuuuaUGCCaa--UGGGCCGUGUa-----UG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 120728 | 0.7 | 0.99839 |
Target: 5'- aCUAGugGGUACcGUgACCCGGCcCAUACc -3' miRNA: 3'- -GAUU--UUAUGcCAaUGGGCCGuGUAUG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 123122 | 0.68 | 0.999548 |
Target: 5'- ------cGCGGgcgGCCCGGCGCc--- -3' miRNA: 3'- gauuuuaUGCCaa-UGGGCCGUGuaug -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 1847 | 0.67 | 0.999944 |
Target: 5'- ------cGCGGguggcGCCUGGCACAggGCu -3' miRNA: 3'- gauuuuaUGCCaa---UGGGCCGUGUa-UG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 94878 | 0.67 | 0.999944 |
Target: 5'- gCUAAGGUGCGaGUgaagcuucUCCGGCACGa-- -3' miRNA: 3'- -GAUUUUAUGC-CAau------GGGCCGUGUaug -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 96511 | 0.66 | 0.999959 |
Target: 5'- gCUAGAucGCGG--GCauGGCGCGUGCa -3' miRNA: 3'- -GAUUUuaUGCCaaUGggCCGUGUAUG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 57222 | 0.66 | 0.999959 |
Target: 5'- gUAGGAaGCGuaGUUACCCaGCACGUcACa -3' miRNA: 3'- gAUUUUaUGC--CAAUGGGcCGUGUA-UG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 88688 | 0.66 | 0.99997 |
Target: 5'- -gAGAGaACGGUUagACCCGGCcucCGUGg -3' miRNA: 3'- gaUUUUaUGCCAA--UGGGCCGu--GUAUg -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 107079 | 0.66 | 0.999978 |
Target: 5'- -aGAAAUGCGGccaccaGCCCccacgGGCACAacuUGCa -3' miRNA: 3'- gaUUUUAUGCCaa----UGGG-----CCGUGU---AUG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 28544 | 0.66 | 0.999978 |
Target: 5'- --------aGGUUGCCUGGCuACAgGCa -3' miRNA: 3'- gauuuuaugCCAAUGGGCCG-UGUaUG- -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 120160 | 0.66 | 0.999984 |
Target: 5'- ---cGAUGgGGUggGgCCGGCGCGUGu -3' miRNA: 3'- gauuUUAUgCCAa-UgGGCCGUGUAUg -5' |
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2722 | 3' | -45.7 | NC_001491.2 | + | 106325 | 0.66 | 0.999989 |
Target: 5'- -gGAGGUGuCGGcggACCCaGGCACAg-- -3' miRNA: 3'- gaUUUUAU-GCCaa-UGGG-CCGUGUaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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