Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2722 | 5' | -59.4 | NC_001491.2 | + | 148948 | 0.66 | 0.774659 |
Target: 5'- uGGGccacgccgGGGCuCGGGcCGgGGUGCUCAa -3' miRNA: 3'- -UCCaua-----CCCG-GCCCaGUgCCAUGGGU- -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 145657 | 0.72 | 0.428695 |
Target: 5'- uGGGUcUGGGguaUGGGUCugGGguugGCCCGc -3' miRNA: 3'- -UCCAuACCCg--GCCCAGugCCa---UGGGU- -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 59931 | 0.71 | 0.482658 |
Target: 5'- cAGGgAUGGGUgGGGUCACacagcuccgggGGUACCa- -3' miRNA: 3'- -UCCaUACCCGgCCCAGUG-----------CCAUGGgu -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 146933 | 0.7 | 0.530008 |
Target: 5'- uGGGUAUGcugaacacGGCCuGGGUgACGGUccaggccgagGCCCGg -3' miRNA: 3'- -UCCAUAC--------CCGG-CCCAgUGCCA----------UGGGU- -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 121347 | 0.69 | 0.578953 |
Target: 5'- uGGgcUGGGCCgGGGUCGCcggagcuggGGUugCUg -3' miRNA: 3'- uCCauACCCGG-CCCAGUG---------CCAugGGu -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 20323 | 0.69 | 0.588875 |
Target: 5'- uGGGUG-GGGCCGGGgCGCGuccGCCUg -3' miRNA: 3'- -UCCAUaCCCGGCCCaGUGCca-UGGGu -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 128316 | 0.69 | 0.618793 |
Target: 5'- cGGGUGUGGGCUGGcGUugucCAUGGUuucAUCUAc -3' miRNA: 3'- -UCCAUACCCGGCC-CA----GUGCCA---UGGGU- -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 147282 | 0.67 | 0.688587 |
Target: 5'- gAGGU--GGGCCGGGgagGCGGccGCCUg -3' miRNA: 3'- -UCCAuaCCCGGCCCag-UGCCa-UGGGu -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 140235 | 0.66 | 0.765468 |
Target: 5'- cGGGgacgGGGgCGGG-CGCGGacgggcuaUACCCGa -3' miRNA: 3'- -UCCaua-CCCgGCCCaGUGCC--------AUGGGU- -5' |
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2722 | 5' | -59.4 | NC_001491.2 | + | 142499 | 1.08 | 0.001706 |
Target: 5'- gAGGUAUGGGCCGGGUCACGGUACCCAc -3' miRNA: 3'- -UCCAUACCCGGCCCAGUGCCAUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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