Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27220 | 3' | -57 | NC_005832.1 | + | 95321 | 0.68 | 0.681916 |
Target: 5'- cGCCaCggacaaggGAGGGUGGCuGGGGUCAGc-- -3' miRNA: 3'- -UGG-Gaa------CUUCCACCG-CCCCGGUUucu -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 36942 | 0.68 | 0.671498 |
Target: 5'- -aCCUUGAAGGaGGCGGcGGU--AGGAg -3' miRNA: 3'- ugGGAACUUCCaCCGCC-CCGguUUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 54061 | 0.68 | 0.65057 |
Target: 5'- cCCCUUGGAGGUGaCGuGGCCccAGGc -3' miRNA: 3'- uGGGAACUUCCACcGCcCCGGuuUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 49511 | 0.69 | 0.615936 |
Target: 5'- gUCCgaGGAGGUcaGGCGGGacauggcggcgcacGCCGAAGAg -3' miRNA: 3'- uGGGaaCUUCCA--CCGCCC--------------CGGUUUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 12106 | 0.69 | 0.587689 |
Target: 5'- gACCCcaugUUGGAGGgGGCGGGGU---AGAc -3' miRNA: 3'- -UGGG----AACUUCCaCCGCCCCGguuUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 26608 | 0.75 | 0.299154 |
Target: 5'- gGCCUUU-AAGGUGGCGaGGGCCGccGGg -3' miRNA: 3'- -UGGGAAcUUCCACCGC-CCCGGUuuCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 47729 | 0.66 | 0.791512 |
Target: 5'- aGCUCUgccUGAcGGGcaUGGCGGccgcgaggccGGCCAAGGAg -3' miRNA: 3'- -UGGGA---ACU-UCC--ACCGCC----------CCGGUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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