Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27220 | 3' | -57 | NC_005832.1 | + | 67027 | 0.68 | 0.640078 |
Target: 5'- gGCCCUggcggcGGccGUGGCGaGGGCCGcGGGc -3' miRNA: 3'- -UGGGAa-----CUucCACCGC-CCCGGUuUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 36164 | 0.68 | 0.65057 |
Target: 5'- uGCCCaUGggGaUGGUugaGGGGUCAGAGu -3' miRNA: 3'- -UGGGaACuuCcACCG---CCCCGGUUUCu -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 6522 | 0.67 | 0.692291 |
Target: 5'- gGCCCU-----GUG-CGGGGCCAGGGAc -3' miRNA: 3'- -UGGGAacuucCACcGCCCCGGUUUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 31046 | 0.67 | 0.702614 |
Target: 5'- aACCC-UGucGGUGGUGGGGUgGu--- -3' miRNA: 3'- -UGGGaACuuCCACCGCCCCGgUuucu -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 5419 | 0.67 | 0.712873 |
Target: 5'- cACCCU-GGAGGUggacgaGGUGGGGgugcCCGAAGc -3' miRNA: 3'- -UGGGAaCUUCCA------CCGCCCC----GGUUUCu -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 8286 | 0.67 | 0.712873 |
Target: 5'- aGCCCauggUGAAGGUGcCGGaGGCggacggCAGAGAg -3' miRNA: 3'- -UGGGa---ACUUCCACcGCC-CCG------GUUUCU- -5' |
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27220 | 3' | -57 | NC_005832.1 | + | 83265 | 1.08 | 0.001525 |
Target: 5'- uACCCUUGAAGGUGGCGGGGCCAAAGAg -3' miRNA: 3'- -UGGGAACUUCCACCGCCCCGGUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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