miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27221 3' -54.3 NC_005832.1 + 102222 0.66 0.899695
Target:  5'- uGGCUGCcucGgCGGCCUCcauggcggACGGUGUUa- -3'
miRNA:   3'- -CCGAUGu--CgGCCGGAG--------UGUUACAGac -5'
27221 3' -54.3 NC_005832.1 + 20620 0.66 0.899695
Target:  5'- cGGCUACAGCCcuGGCCa-ACAuguacGUCg- -3'
miRNA:   3'- -CCGAUGUCGG--CCGGagUGUua---CAGac -5'
27221 3' -54.3 NC_005832.1 + 35191 0.66 0.886539
Target:  5'- uGGCUGCGauuGCgUGGCCUCugugggagacagccuCAggGUCUGg -3'
miRNA:   3'- -CCGAUGU---CG-GCCGGAGu--------------GUuaCAGAC- -5'
27221 3' -54.3 NC_005832.1 + 56118 0.67 0.8632
Target:  5'- cGGCUAC-GCgGGCC-C-C-GUGUCUGg -3'
miRNA:   3'- -CCGAUGuCGgCCGGaGuGuUACAGAC- -5'
27221 3' -54.3 NC_005832.1 + 98258 0.68 0.821076
Target:  5'- -cCUACGGCCGuCCUCACuccAAUGUCc- -3'
miRNA:   3'- ccGAUGUCGGCcGGAGUG---UUACAGac -5'
27221 3' -54.3 NC_005832.1 + 43268 0.68 0.783978
Target:  5'- cGGUggcCAGCaCGGCCUccCugGGUGUCUc -3'
miRNA:   3'- -CCGau-GUCG-GCCGGA--GugUUACAGAc -5'
27221 3' -54.3 NC_005832.1 + 12849 0.69 0.744513
Target:  5'- aGC-ACAGCuCGGCCUCGuCGGgggcGUCUGc -3'
miRNA:   3'- cCGaUGUCG-GCCGGAGU-GUUa---CAGAC- -5'
27221 3' -54.3 NC_005832.1 + 16873 0.69 0.724098
Target:  5'- gGGCaACGGUCauguaaacguuGGCCUCgACAGUGUCg- -3'
miRNA:   3'- -CCGaUGUCGG-----------CCGGAG-UGUUACAGac -5'
27221 3' -54.3 NC_005832.1 + 96545 0.7 0.682319
Target:  5'- cGGCggggGCAGaguaggauCCGGCuCUCACGGUGUUg- -3'
miRNA:   3'- -CCGa---UGUC--------GGCCG-GAGUGUUACAGac -5'
27221 3' -54.3 NC_005832.1 + 48155 0.71 0.661119
Target:  5'- aGGCga-AGCCGGCCUugacCAgGAcGUCUGa -3'
miRNA:   3'- -CCGaugUCGGCCGGA----GUgUUaCAGAC- -5'
27221 3' -54.3 NC_005832.1 + 70850 0.71 0.638752
Target:  5'- cGGCUGCGG-CGGCCUCucugacuGCuuUGUCa- -3'
miRNA:   3'- -CCGAUGUCgGCCGGAG-------UGuuACAGac -5'
27221 3' -54.3 NC_005832.1 + 84487 1.1 0.002314
Target:  5'- uGGCUACAGCCGGCCUCACAAUGUCUGc -3'
miRNA:   3'- -CCGAUGUCGGCCGGAGUGUUACAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.