miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27221 5' -56.9 NC_005832.1 + 79014 0.66 0.783745
Target:  5'- -cCAGGCUCaGGGACucUGCCacccUGGCCGc -3'
miRNA:   3'- gaGUCUGAGaCUCUG--ACGGa---GCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 95788 0.66 0.774231
Target:  5'- cCUCGGGCU----GGCUGcCCUCGGCUu -3'
miRNA:   3'- -GAGUCUGAgacuCUGAC-GGAGCCGGu -5'
27221 5' -56.9 NC_005832.1 + 97511 0.66 0.764584
Target:  5'- gUCAGGCUCuUGAGACgGUCg-GGCUu -3'
miRNA:   3'- gAGUCUGAG-ACUCUGaCGGagCCGGu -5'
27221 5' -56.9 NC_005832.1 + 103404 0.66 0.764584
Target:  5'- cCUUGGACUCuUGAGAaaGa-UCGGCCAc -3'
miRNA:   3'- -GAGUCUGAG-ACUCUgaCggAGCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 76701 0.66 0.763612
Target:  5'- uUCAGACgccuccCUGAGACcagcagucucugaUGCCgUGGCCu -3'
miRNA:   3'- gAGUCUGa-----GACUCUG-------------ACGGaGCCGGu -5'
27221 5' -56.9 NC_005832.1 + 67234 0.67 0.733935
Target:  5'- cCUCAGGCcCUGggagaggGGGCUGCCUCucuacccggugaGGCUg -3'
miRNA:   3'- -GAGUCUGaGAC-------UCUGACGGAG------------CCGGu -5'
27221 5' -56.9 NC_005832.1 + 6244 0.68 0.694146
Target:  5'- -aUAGAgUCUGgaaAGAUUGUCUCuGGCCAc -3'
miRNA:   3'- gaGUCUgAGAC---UCUGACGGAG-CCGGU- -5'
27221 5' -56.9 NC_005832.1 + 66225 0.68 0.694146
Target:  5'- gUCAGGCUC-GAGuGCUGCCcuggaGGCUAu -3'
miRNA:   3'- gAGUCUGAGaCUC-UGACGGag---CCGGU- -5'
27221 5' -56.9 NC_005832.1 + 7950 0.7 0.558538
Target:  5'- --gAGACcCUGGGGCUGgCggCGGCCAa -3'
miRNA:   3'- gagUCUGaGACUCUGACgGa-GCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 33741 0.71 0.507864
Target:  5'- uCUCAGAaaaCUCUGAGuggcgaUGCUggCGGCCAa -3'
miRNA:   3'- -GAGUCU---GAGACUCug----ACGGa-GCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 15197 0.71 0.478405
Target:  5'- cCUgAGGCUCaGAGuCUGgCUCGGUCAg -3'
miRNA:   3'- -GAgUCUGAGaCUCuGACgGAGCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 84642 0.72 0.449811
Target:  5'- uCUCAGAgUCUGAGACgUGCg-CGGCa- -3'
miRNA:   3'- -GAGUCUgAGACUCUG-ACGgaGCCGgu -5'
27221 5' -56.9 NC_005832.1 + 85783 0.72 0.449811
Target:  5'- gUCAGACUCUGAGGCUgaaGCCccCGcaccuGCCAu -3'
miRNA:   3'- gAGUCUGAGACUCUGA---CGGa-GC-----CGGU- -5'
27221 5' -56.9 NC_005832.1 + 92934 0.73 0.404342
Target:  5'- -aCAGAgCUCUGAGGCgugGCCUCGuaguacuugucuGCCAu -3'
miRNA:   3'- gaGUCU-GAGACUCUGa--CGGAGC------------CGGU- -5'
27221 5' -56.9 NC_005832.1 + 66675 0.73 0.395602
Target:  5'- uCUCAGGCUCUGcuGGAagcccagGCCgCGGCCGg -3'
miRNA:   3'- -GAGUCUGAGAC--UCUga-----CGGaGCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 97202 0.74 0.345793
Target:  5'- -aCAGGCUCcugGAGcagGCCUCGGCCGu -3'
miRNA:   3'- gaGUCUGAGa--CUCugaCGGAGCCGGU- -5'
27221 5' -56.9 NC_005832.1 + 35040 0.75 0.279159
Target:  5'- -cCAGACcCUGAGGCUGUCUCccacagaGGCCAc -3'
miRNA:   3'- gaGUCUGaGACUCUGACGGAG-------CCGGU- -5'
27221 5' -56.9 NC_005832.1 + 84523 1.08 0.001584
Target:  5'- uCUCAGACUCUGAGACUGCCUCGGCCAa -3'
miRNA:   3'- -GAGUCUGAGACUCUGACGGAGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.