miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27223 3' -54.5 NC_005832.1 + 39497 0.66 0.911172
Target:  5'- cGAUCCCUCUgCUCcCCUGGGCcccUGGg -3'
miRNA:   3'- aCUGGGGAGAaGGGaGGACUUGc--AUC- -5'
27223 3' -54.5 NC_005832.1 + 71059 0.66 0.911172
Target:  5'- gGAUCCCgCUUCCCugaaccugacuuUCCUGGGCu--- -3'
miRNA:   3'- aCUGGGGaGAAGGG------------AGGACUUGcauc -5'
27223 3' -54.5 NC_005832.1 + 55300 0.66 0.90486
Target:  5'- uUGGCCaCCUCUguggCCCUgggaucCCUGAGgGUc- -3'
miRNA:   3'- -ACUGG-GGAGAa---GGGA------GGACUUgCAuc -5'
27223 3' -54.5 NC_005832.1 + 35003 0.67 0.837303
Target:  5'- --uUCCCUCUaCCCUCUUGAGacggGUAGc -3'
miRNA:   3'- acuGGGGAGAaGGGAGGACUUg---CAUC- -5'
27223 3' -54.5 NC_005832.1 + 95903 0.68 0.828706
Target:  5'- cGGgCCCUC--CCCUCUUGAugGUc- -3'
miRNA:   3'- aCUgGGGAGaaGGGAGGACUugCAuc -5'
27223 3' -54.5 NC_005832.1 + 95490 0.68 0.828706
Target:  5'- cGGgCCCUC--CCCUCUUGAugGUc- -3'
miRNA:   3'- aCUgGGGAGaaGGGAGGACUugCAuc -5'
27223 3' -54.5 NC_005832.1 + 67597 0.68 0.783037
Target:  5'- cGACCCUUCUUgCCUCggGGAC-UGGa -3'
miRNA:   3'- aCUGGGGAGAAgGGAGgaCUUGcAUC- -5'
27223 3' -54.5 NC_005832.1 + 18636 0.69 0.763689
Target:  5'- aGACCCUUCUUCuuucuCCUCUUGGGCc--- -3'
miRNA:   3'- aCUGGGGAGAAG-----GGAGGACUUGcauc -5'
27223 3' -54.5 NC_005832.1 + 42722 0.7 0.713311
Target:  5'- gGGCCCCUUaucgccUUCCUUCUGGACGg-- -3'
miRNA:   3'- aCUGGGGAGa-----AGGGAGGACUUGCauc -5'
27223 3' -54.5 NC_005832.1 + 44200 0.7 0.692572
Target:  5'- --uUCCCUCUaCCCUCCUG-ACGaGGg -3'
miRNA:   3'- acuGGGGAGAaGGGAGGACuUGCaUC- -5'
27223 3' -54.5 NC_005832.1 + 49392 0.71 0.671616
Target:  5'- cUGACCuCCUCggacCCUUCCUuGGugGUGGc -3'
miRNA:   3'- -ACUGG-GGAGaa--GGGAGGA-CUugCAUC- -5'
27223 3' -54.5 NC_005832.1 + 95700 0.71 0.639949
Target:  5'- cGugCCCUC--CCCUCUUGAugGUc- -3'
miRNA:   3'- aCugGGGAGaaGGGAGGACUugCAuc -5'
27223 3' -54.5 NC_005832.1 + 80508 0.72 0.58715
Target:  5'- cGACCCC-CUgUCCUUCCUGGGCu--- -3'
miRNA:   3'- aCUGGGGaGA-AGGGAGGACUUGcauc -5'
27223 3' -54.5 NC_005832.1 + 12458 0.72 0.566218
Target:  5'- aUGGCCUCguagUCUUUCCUCCUGGACu--- -3'
miRNA:   3'- -ACUGGGG----AGAAGGGAGGACUUGcauc -5'
27223 3' -54.5 NC_005832.1 + 55715 0.76 0.389449
Target:  5'- cUGACCgCCUCUgCCCUCCUGAugccggacagugugGCGUc- -3'
miRNA:   3'- -ACUGG-GGAGAaGGGAGGACU--------------UGCAuc -5'
27223 3' -54.5 NC_005832.1 + 87201 1.09 0.002572
Target:  5'- cUGACCCCUCUUCCCUCCUGAACGUAGa -3'
miRNA:   3'- -ACUGGGGAGAAGGGAGGACUUGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.