miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27223 5' -61.2 NC_005832.1 + 14257 0.67 0.514225
Target:  5'- gUCCUCugCCUGGguuucugccaggacaAGAGUCUcGAcGGGUg -3'
miRNA:   3'- uGGGAGugGGACC---------------UCUCGGA-CU-CCCG- -5'
27223 5' -61.2 NC_005832.1 + 7957 0.67 0.510349
Target:  5'- cACCCUCcgucccugcCCCUGaGGAGCCUGuAGGa- -3'
miRNA:   3'- -UGGGAGu--------GGGACcUCUCGGAC-UCCcg -5'
27223 5' -61.2 NC_005832.1 + 39362 0.67 0.510349
Target:  5'- gGCCCagggGCCCaGGGGAGCa-GAGGGa -3'
miRNA:   3'- -UGGGag--UGGGaCCUCUCGgaCUCCCg -5'
27223 5' -61.2 NC_005832.1 + 79861 0.67 0.510349
Target:  5'- uCCCUgacUGCCgaGGAGcaGGCCgaggaGAGGGCg -3'
miRNA:   3'- uGGGA---GUGGgaCCUC--UCGGa----CUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 100469 0.67 0.506484
Target:  5'- gACCgUCcCCCUGGAcagguucauGAGCCUGucuacguccucauGGGUg -3'
miRNA:   3'- -UGGgAGuGGGACCU---------CUCGGACu------------CCCG- -5'
27223 5' -61.2 NC_005832.1 + 10231 0.67 0.500711
Target:  5'- cGCCCUCcaggaCCUGGcuauGGCCUGGGcGGUc -3'
miRNA:   3'- -UGGGAGug---GGACCuc--UCGGACUC-CCG- -5'
27223 5' -61.2 NC_005832.1 + 53816 0.67 0.500711
Target:  5'- cCCUUCGCCUggGGuuccAGGGuCCUGGGaGGCa -3'
miRNA:   3'- uGGGAGUGGGa-CC----UCUC-GGACUC-CCG- -5'
27223 5' -61.2 NC_005832.1 + 44609 0.67 0.500711
Target:  5'- uACggUCAUCCUGGAGggaaaGGCgUGGGGGUu -3'
miRNA:   3'- -UGggAGUGGGACCUC-----UCGgACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 67232 0.67 0.491155
Target:  5'- gUCCUCagGCCCUGG-GAGa--GGGGGCu -3'
miRNA:   3'- uGGGAG--UGGGACCuCUCggaCUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 40832 0.67 0.491155
Target:  5'- gACCUgggagcCACCCUGccguaGAG-GCCcGGGGGCa -3'
miRNA:   3'- -UGGGa-----GUGGGAC-----CUCuCGGaCUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 53327 0.67 0.491155
Target:  5'- uGCCCUgGCCUacagggccaUGGAuuucGAGCCcaUGAcGGGCu -3'
miRNA:   3'- -UGGGAgUGGG---------ACCU----CUCGG--ACU-CCCG- -5'
27223 5' -61.2 NC_005832.1 + 78526 0.67 0.490204
Target:  5'- uCCUUUACCCUGGugacguccacAGAGUCUGGGucgacgugaacgaGGCu -3'
miRNA:   3'- uGGGAGUGGGACC----------UCUCGGACUC-------------CCG- -5'
27223 5' -61.2 NC_005832.1 + 105110 0.67 0.481685
Target:  5'- -aCCUCACCgUuGAGGGCgUaGAGGGUu -3'
miRNA:   3'- ugGGAGUGGgAcCUCUCGgA-CUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 6848 0.68 0.472304
Target:  5'- uCCCaCACCCUGGGGuAGUggGGGaGGCu -3'
miRNA:   3'- uGGGaGUGGGACCUC-UCGgaCUC-CCG- -5'
27223 5' -61.2 NC_005832.1 + 46950 0.68 0.472304
Target:  5'- uCUCUgACCCgGGAGuGCCUGGauccacgcGGGUg -3'
miRNA:   3'- uGGGAgUGGGaCCUCuCGGACU--------CCCG- -5'
27223 5' -61.2 NC_005832.1 + 75920 0.68 0.463016
Target:  5'- gGCCCUgGCCaaGGAGAGgg-GAGaGGCa -3'
miRNA:   3'- -UGGGAgUGGgaCCUCUCggaCUC-CCG- -5'
27223 5' -61.2 NC_005832.1 + 87096 0.68 0.460248
Target:  5'- -aCCUCACUCUccucaGGGGAGugagcguacuguccCCUGAGGGg -3'
miRNA:   3'- ugGGAGUGGGA-----CCUCUC--------------GGACUCCCg -5'
27223 5' -61.2 NC_005832.1 + 46065 0.68 0.44383
Target:  5'- uCCCUguCCUccaGGAGGGCCUGAGccgugaugcuguaGGCu -3'
miRNA:   3'- uGGGAguGGGa--CCUCUCGGACUC-------------CCG- -5'
27223 5' -61.2 NC_005832.1 + 53991 0.68 0.435745
Target:  5'- cCCCUCuCCCUGGcGGuGCCgUGAGcGGg -3'
miRNA:   3'- uGGGAGuGGGACC-UCuCGG-ACUC-CCg -5'
27223 5' -61.2 NC_005832.1 + 52243 0.68 0.42598
Target:  5'- gACCCUCcucCCCUGGAGGcgacgcuGUCUGGGauaguGGCc -3'
miRNA:   3'- -UGGGAGu--GGGACCUCU-------CGGACUC-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.