miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 3' -60 NC_005832.1 + 14032 0.66 0.656196
Target:  5'- gGUGUaCG-GGACCUcuaugagauuuAUGCCcagcuucugacagGCCGCCCUc -3'
miRNA:   3'- -UACA-GCuCCUGGA-----------UGCGG-------------UGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 23759 0.66 0.636695
Target:  5'- cUGUaCGccGGCCUGCcuuaCGCCGCCCUg -3'
miRNA:   3'- uACA-GCucCUGGAUGcg--GUGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 78146 0.66 0.636695
Target:  5'- -aGUCaggccaAGGACCUucaaggACGUCACCGaCCCg -3'
miRNA:   3'- uaCAGc-----UCCUGGA------UGCGGUGGC-GGGa -5'
27225 3' -60 NC_005832.1 + 67564 0.66 0.626423
Target:  5'- --cUUGAGGugaGCCgcCGCCGCgGCCCa -3'
miRNA:   3'- uacAGCUCC---UGGauGCGGUGgCGGGa -5'
27225 3' -60 NC_005832.1 + 15446 0.66 0.626423
Target:  5'- -cGUCaauuAGGACC-ACGCCGgCGaCCCUg -3'
miRNA:   3'- uaCAGc---UCCUGGaUGCGGUgGC-GGGA- -5'
27225 3' -60 NC_005832.1 + 87110 0.66 0.616155
Target:  5'- -gGUC-AGGGCCUucuuugACGCCuCCGCCa- -3'
miRNA:   3'- uaCAGcUCCUGGA------UGCGGuGGCGGga -5'
27225 3' -60 NC_005832.1 + 21093 0.66 0.605899
Target:  5'- uUGcCGGGGcCCguagggACGCCccgGCCGUCCUg -3'
miRNA:   3'- uACaGCUCCuGGa-----UGCGG---UGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 44547 0.67 0.585453
Target:  5'- ---cUGGGcaaGACCUacgACGCCACCGCCUUc -3'
miRNA:   3'- uacaGCUC---CUGGA---UGCGGUGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 4347 0.67 0.565143
Target:  5'- -gGUCGAGcACgagACGUCGCUGCCCg -3'
miRNA:   3'- uaCAGCUCcUGga-UGCGGUGGCGGGa -5'
27225 3' -60 NC_005832.1 + 56215 0.67 0.565143
Target:  5'- -cGUCGGuGGACuugagCUugGCCACCGCg-- -3'
miRNA:   3'- uaCAGCU-CCUG-----GAugCGGUGGCGgga -5'
27225 3' -60 NC_005832.1 + 92359 0.67 0.565143
Target:  5'- gAUGa-GAGGACCgggaGCCGCCGUCUUu -3'
miRNA:   3'- -UACagCUCCUGGaug-CGGUGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 75219 0.68 0.535047
Target:  5'- -gGUCaggaGGGGAuCCUACGCCGCCuacauGUCCa -3'
miRNA:   3'- uaCAG----CUCCU-GGAUGCGGUGG-----CGGGa -5'
27225 3' -60 NC_005832.1 + 26599 0.68 0.525138
Target:  5'- gGUGgCGAGGGCCgccGgGUgGCUGCCCg -3'
miRNA:   3'- -UACaGCUCCUGGa--UgCGgUGGCGGGa -5'
27225 3' -60 NC_005832.1 + 13856 0.68 0.525138
Target:  5'- -aGUCGAGcuCCaGCGCC-CUGCCCg -3'
miRNA:   3'- uaCAGCUCcuGGaUGCGGuGGCGGGa -5'
27225 3' -60 NC_005832.1 + 13056 0.68 0.505535
Target:  5'- --cUCGGGGGCCUGCucGCCuCCGUUCUu -3'
miRNA:   3'- uacAGCUCCUGGAUG--CGGuGGCGGGA- -5'
27225 3' -60 NC_005832.1 + 71618 0.68 0.495851
Target:  5'- -aGUCGucG-CCgcuagcgGCGCCGCCGCCUa -3'
miRNA:   3'- uaCAGCucCuGGa------UGCGGUGGCGGGa -5'
27225 3' -60 NC_005832.1 + 74486 0.69 0.480536
Target:  5'- -gGUUGAGGGCCUugacgaccucgaGCgcauaagguuuagaaGCCGCCGUCCa -3'
miRNA:   3'- uaCAGCUCCUGGA------------UG---------------CGGUGGCGGGa -5'
27225 3' -60 NC_005832.1 + 31544 0.69 0.458007
Target:  5'- cGUGUCuuauGuGGCCcagUGCGCCACCGCUCa -3'
miRNA:   3'- -UACAGcu--C-CUGG---AUGCGGUGGCGGGa -5'
27225 3' -60 NC_005832.1 + 41872 0.69 0.430662
Target:  5'- ----gGAGGACCgACGCCACCuaCCa -3'
miRNA:   3'- uacagCUCCUGGaUGCGGUGGcgGGa -5'
27225 3' -60 NC_005832.1 + 27992 0.71 0.370776
Target:  5'- -gGUCcAGGGCCUGCccgGCCGCCuccuuuGCCCUg -3'
miRNA:   3'- uaCAGcUCCUGGAUG---CGGUGG------CGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.