miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 5' -62.2 NC_005832.1 + 52360 0.67 0.424218
Target:  5'- gGGAGGAgggucguggcUCCUGGCCGuGGCaaacaugugcaagcUCCUGGuCc -3'
miRNA:   3'- -UCUCCU----------GGGACCGGU-CCG--------------AGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 28041 0.68 0.418088
Target:  5'- uGGGGGuACCgUGGCuCAGGC-CCUGucCa -3'
miRNA:   3'- -UCUCC-UGGgACCG-GUCCGaGGACcuG- -5'
27225 5' -62.2 NC_005832.1 + 101900 0.68 0.409424
Target:  5'- aAGAGGcGCaggGGCCAGGUUUUUGGAg -3'
miRNA:   3'- -UCUCC-UGggaCCGGUCCGAGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 87573 0.68 0.409424
Target:  5'- --uGGugCCUccGGaCCaaAGGCUCCUGGAg -3'
miRNA:   3'- ucuCCugGGA--CC-GG--UCCGAGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 27861 0.68 0.409424
Target:  5'- aGGAGGcGgCC-GGgCAGGC-CCUGGACc -3'
miRNA:   3'- -UCUCC-UgGGaCCgGUCCGaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 103632 0.68 0.400873
Target:  5'- uGGAGcuGACCCUGaCCgGGGCaguugcguagUCCUGGACc -3'
miRNA:   3'- -UCUC--CUGGGACcGG-UCCG----------AGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 73090 0.68 0.392437
Target:  5'- cGAGGACCCUGGgguCCGucGGgaCCUacgGGACc -3'
miRNA:   3'- uCUCCUGGGACC---GGU--CCgaGGA---CCUG- -5'
27225 5' -62.2 NC_005832.1 + 66604 0.68 0.384117
Target:  5'- uGAGG-UCCUGGCUggAGGacucgagggCCUGGACg -3'
miRNA:   3'- uCUCCuGGGACCGG--UCCga-------GGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 29128 0.68 0.384117
Target:  5'- cGAGGGCUCUGacggaacCCAGGCUUagCUGGAa -3'
miRNA:   3'- uCUCCUGGGACc------GGUCCGAG--GACCUg -5'
27225 5' -62.2 NC_005832.1 + 36054 0.68 0.367832
Target:  5'- cGAGGGgUg-GGCCGGGUggacgcUCCUGGGCu -3'
miRNA:   3'- uCUCCUgGgaCCGGUCCG------AGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 11375 0.68 0.367832
Target:  5'- uGAGGAgcgccgcucCCCUGGCCAGGaCUaugcagccUCUGGuCa -3'
miRNA:   3'- uCUCCU---------GGGACCGGUCC-GA--------GGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 4991 0.68 0.367832
Target:  5'- -aGGGACUCugacgUGGaCAGGgUCCUGGGCa -3'
miRNA:   3'- ucUCCUGGG-----ACCgGUCCgAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 63998 0.68 0.367832
Target:  5'- uGAGGGCCCUGauaCCcGGCUCCcugaugucUGGAa -3'
miRNA:   3'- uCUCCUGGGACc--GGuCCGAGG--------ACCUg -5'
27225 5' -62.2 NC_005832.1 + 87255 0.69 0.359869
Target:  5'- uGAGGGCCaUGGUCaAGGCgUCUGGAa -3'
miRNA:   3'- uCUCCUGGgACCGG-UCCGaGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 46101 0.69 0.352027
Target:  5'- -uAGGcuuUCCUGGCCAGGCcagaguugucccUCCUGGcCa -3'
miRNA:   3'- ucUCCu--GGGACCGGUCCG------------AGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 65840 0.69 0.352027
Target:  5'- uGGAGGGCCCUcaGCCucuGGUuguccUCCgUGGACg -3'
miRNA:   3'- -UCUCCUGGGAc-CGGu--CCG-----AGG-ACCUG- -5'
27225 5' -62.2 NC_005832.1 + 102075 0.69 0.321884
Target:  5'- ---uGGCCUUGGCCAGGg-UCUGGGCg -3'
miRNA:   3'- ucucCUGGGACCGGUCCgaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 95512 0.7 0.314656
Target:  5'- cGAGGugUCcggagcGGCCAGGgUCCccgGGACa -3'
miRNA:   3'- uCUCCugGGa-----CCGGUCCgAGGa--CCUG- -5'
27225 5' -62.2 NC_005832.1 + 75917 0.7 0.306848
Target:  5'- -cAGGGCCCUGGCCaaggagaggggagAGGCaCC-GGACc -3'
miRNA:   3'- ucUCCUGGGACCGG-------------UCCGaGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 87495 0.71 0.273872
Target:  5'- cGAGGACCagggcagcgucCUccaggcuggcGGCCauguaccacgacGGGCUCCUGGACu -3'
miRNA:   3'- uCUCCUGG-----------GA----------CCGG------------UCCGAGGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.