miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27226 3' -53.3 NC_005832.1 + 72665 0.66 0.95187
Target:  5'- --cGACGGCCcaaaggGUCCcgUUGGUC-CCa -3'
miRNA:   3'- gaaCUGCUGGa-----CGGGaaAGCCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 62917 0.66 0.95187
Target:  5'- uCUUGACGuCCuUGUCCUUgaGGUgCUUCu -3'
miRNA:   3'- -GAACUGCuGG-ACGGGAAagCCA-GAGG- -5'
27226 3' -53.3 NC_005832.1 + 17167 0.66 0.95187
Target:  5'- ---aGCGGCCUgGCCCUgccaguuGUCUCCc -3'
miRNA:   3'- gaacUGCUGGA-CGGGAaagc---CAGAGG- -5'
27226 3' -53.3 NC_005832.1 + 16798 0.66 0.95187
Target:  5'- --gGGCGGCCUGCaCCUg-----CUCCa -3'
miRNA:   3'- gaaCUGCUGGACG-GGAaagccaGAGG- -5'
27226 3' -53.3 NC_005832.1 + 8183 0.66 0.947543
Target:  5'- --aGugGGCCUGCCCcUUCucaUCaUCCu -3'
miRNA:   3'- gaaCugCUGGACGGGaAAGcc-AG-AGG- -5'
27226 3' -53.3 NC_005832.1 + 79170 0.66 0.947543
Target:  5'- uCUUGugGGCCcuguugaGCUCg-UCGGUCUgCa -3'
miRNA:   3'- -GAACugCUGGa------CGGGaaAGCCAGAgG- -5'
27226 3' -53.3 NC_005832.1 + 88333 0.66 0.942967
Target:  5'- ---aGCGGCCUGCucCCUgucugUCGGUUgCCu -3'
miRNA:   3'- gaacUGCUGGACG--GGAa----AGCCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 98323 0.66 0.942967
Target:  5'- --gGACGGCCUGCUUUUccaCGGUgggCCu -3'
miRNA:   3'- gaaCUGCUGGACGGGAAa--GCCAga-GG- -5'
27226 3' -53.3 NC_005832.1 + 97994 0.66 0.938138
Target:  5'- --gGACGGUCUGaCCCUUUCaaaaGGUUUCUc -3'
miRNA:   3'- gaaCUGCUGGAC-GGGAAAG----CCAGAGG- -5'
27226 3' -53.3 NC_005832.1 + 78607 0.66 0.938138
Target:  5'- -cUGACgGACCUuagccucuuuaGCCUgacgUCGGUCgCCg -3'
miRNA:   3'- gaACUG-CUGGA-----------CGGGaa--AGCCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 1259 0.66 0.927718
Target:  5'- --cGcCGACCUGUCCUcgCGGgacgCCg -3'
miRNA:   3'- gaaCuGCUGGACGGGAaaGCCaga-GG- -5'
27226 3' -53.3 NC_005832.1 + 7403 0.67 0.910169
Target:  5'- --gGACGACgCgggguccgUGCCC-UUCGGggagCUCCu -3'
miRNA:   3'- gaaCUGCUG-G--------ACGGGaAAGCCa---GAGG- -5'
27226 3' -53.3 NC_005832.1 + 32400 0.67 0.910169
Target:  5'- -gUGGCGACUggcuccgggGCCCUaaaGGcCUCCu -3'
miRNA:   3'- gaACUGCUGGa--------CGGGAaagCCaGAGG- -5'
27226 3' -53.3 NC_005832.1 + 50898 0.67 0.903812
Target:  5'- -cUGuCGgucccACCUGCCCg-UCGGUC-CCa -3'
miRNA:   3'- gaACuGC-----UGGACGGGaaAGCCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 102234 0.67 0.903812
Target:  5'- uCUUGGCGuCCauggcUGCCUcggCGGcCUCCa -3'
miRNA:   3'- -GAACUGCuGG-----ACGGGaaaGCCaGAGG- -5'
27226 3' -53.3 NC_005832.1 + 40320 0.67 0.89653
Target:  5'- --cGGCGGCCUGuCCCUcauuaaaaacucuUUCGGcuagcaUCUCg -3'
miRNA:   3'- gaaCUGCUGGAC-GGGA-------------AAGCC------AGAGg -5'
27226 3' -53.3 NC_005832.1 + 32491 0.68 0.868347
Target:  5'- gCUUGGCGGCCUGCCgUacacauggaGGUUgCCc -3'
miRNA:   3'- -GAACUGCUGGACGGgAaag------CCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 18727 0.68 0.860551
Target:  5'- cCUUuGCGACCucuuuUGCCUUUUUGGUCgCUa -3'
miRNA:   3'- -GAAcUGCUGG-----ACGGGAAAGCCAGaGG- -5'
27226 3' -53.3 NC_005832.1 + 76912 0.69 0.852534
Target:  5'- --gGA-GACCUGCCCgauacUCGGcUUCCa -3'
miRNA:   3'- gaaCUgCUGGACGGGaa---AGCCaGAGG- -5'
27226 3' -53.3 NC_005832.1 + 71286 0.7 0.771747
Target:  5'- -cUGACGGCCucuccggcaaacUGCUUguaguagucgUCGGUCUCCu -3'
miRNA:   3'- gaACUGCUGG------------ACGGGaa--------AGCCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.