miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27227 5' -51.9 NC_005832.1 + 36951 0.66 0.959424
Target:  5'- --cUUUCCUGUgCCCGcaaacauggCCGAAGGAGc -3'
miRNA:   3'- aacAAAGGGCAgGGGCa--------GGUUUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 23474 0.66 0.955465
Target:  5'- gUGUUUUCggaggaGUCCUgguggCGUCCGGAGGAGu -3'
miRNA:   3'- aACAAAGGg-----CAGGG-----GCAGGUUUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 26559 0.66 0.951252
Target:  5'- ----gUCCUGUCCCUcuuuGUCUAcAAGAGg -3'
miRNA:   3'- aacaaAGGGCAGGGG----CAGGUuUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 62791 0.67 0.926247
Target:  5'- -aGUUg-UCGUCCCCGUCCu--GGAa -3'
miRNA:   3'- aaCAAagGGCAGGGGCAGGuuuUCUc -5'
27227 5' -51.9 NC_005832.1 + 75616 0.68 0.894571
Target:  5'- gUGUgcugCCUGUCCuCCGUCaaccuuGAGAGg -3'
miRNA:   3'- aACAaa--GGGCAGG-GGCAGguu---UUCUC- -5'
27227 5' -51.9 NC_005832.1 + 65992 0.68 0.894571
Target:  5'- ---cUUCCCGUCcuCCCGgUCAGGAGGGa -3'
miRNA:   3'- aacaAAGGGCAG--GGGCaGGUUUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 32351 0.68 0.894571
Target:  5'- -cGUUUUCCaUCCCCG-CCGGGgcuGGAGg -3'
miRNA:   3'- aaCAAAGGGcAGGGGCaGGUUU---UCUC- -5'
27227 5' -51.9 NC_005832.1 + 80694 0.69 0.872455
Target:  5'- -----cCCCGUCCCC-UCCAGGgcccuGGAGg -3'
miRNA:   3'- aacaaaGGGCAGGGGcAGGUUU-----UCUC- -5'
27227 5' -51.9 NC_005832.1 + 98084 0.72 0.733747
Target:  5'- -cGUcUgCCGUCCCacgccgaaauguCGUCCAAGAGAGc -3'
miRNA:   3'- aaCAaAgGGCAGGG------------GCAGGUUUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 20733 0.72 0.733747
Target:  5'- cUGUagCCgCGUCUCCGUUgGGAGGAGg -3'
miRNA:   3'- aACAaaGG-GCAGGGGCAGgUUUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 5679 0.74 0.583475
Target:  5'- cUGUgcaccgUCCCGUCCCuCGucUCCAccGAAGAGa -3'
miRNA:   3'- aACAa-----AGGGCAGGG-GC--AGGU--UUUCUC- -5'
27227 5' -51.9 NC_005832.1 + 90040 1.06 0.007143
Target:  5'- gUUGUUUCCCGUCCCCGUCCAAAAGAGc -3'
miRNA:   3'- -AACAAAGGGCAGGGGCAGGUUUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.