Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2723 | 3' | -56.6 | NC_001491.2 | + | 125585 | 0.66 | 0.864619 |
Target: 5'- -cGGcGGCGGCcGUcggaGGGGGGGGAUGc -3' miRNA: 3'- aaCU-CUGUCGaCAca--CCCCCCUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 122436 | 0.66 | 0.8489 |
Target: 5'- aUGGGugGGUUGgcgaGUGGGuuuuGGAGGUGu -3' miRNA: 3'- aACUCugUCGACa---CACCCc---CCUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 140474 | 0.67 | 0.806188 |
Target: 5'- aUGGGAagGGUgggGUG-GGGGGGAGGa- -3' miRNA: 3'- aACUCUg-UCGa--CACaCCCCCCUCUac -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 67008 | 0.67 | 0.787906 |
Target: 5'- ----aACGGgUGUGUGGuuGGGGAGGUGu -3' miRNA: 3'- aacucUGUCgACACACC--CCCCUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 41391 | 0.68 | 0.733882 |
Target: 5'- -cGAGguggccuuguccagcGCGGCUGccacacuuUGUGGGGGuGGGGUGa -3' miRNA: 3'- aaCUC---------------UGUCGAC--------ACACCCCC-CUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 1307 | 0.7 | 0.624115 |
Target: 5'- --uAGugGGCUGggccccacgcuggcUGcGGGGGGAGAUGg -3' miRNA: 3'- aacUCugUCGAC--------------ACaCCCCCCUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 129327 | 0.83 | 0.117929 |
Target: 5'- aUGuGugGGUUGaUGUGGGGGGAGAUGa -3' miRNA: 3'- aACuCugUCGAC-ACACCCCCCUCUAC- -5' |
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2723 | 3' | -56.6 | NC_001491.2 | + | 142987 | 1.05 | 0.00377 |
Target: 5'- cUUGAGACAGCUGUGUGGGGGGAGAUGc -3' miRNA: 3'- -AACUCUGUCGACACACCCCCCUCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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