miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2723 5' -59.8 NC_001491.2 + 145014 0.67 0.711841
Target:  5'- gACCgggUCGgCCGCGUCCcCACCgCCg -3'
miRNA:   3'- -UGGaa-GGUgGGUGCAGGuGUGGgGGg -5'
2723 5' -59.8 NC_001491.2 + 145883 0.67 0.702147
Target:  5'- cCCggUCC-CCC-CGUaUCGCACCCUCCc -3'
miRNA:   3'- uGGa-AGGuGGGuGCA-GGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 115880 0.67 0.702147
Target:  5'- gACCgugCCAUCCACGg--GCGCCCCa- -3'
miRNA:   3'- -UGGaa-GGUGGGUGCaggUGUGGGGgg -5'
2723 5' -59.8 NC_001491.2 + 80088 0.67 0.693375
Target:  5'- gGCCaucUCCACCCAaggaauggcggcguaGUCCAC-CCCaUCCa -3'
miRNA:   3'- -UGGa--AGGUGGGUg--------------CAGGUGuGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 141739 0.68 0.676705
Target:  5'- cGCCgUCCACCagcccccucauccCGUcCCugACCCCCUc -3'
miRNA:   3'- -UGGaAGGUGGgu-----------GCA-GGugUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 147246 0.68 0.633193
Target:  5'- gGCCUUCUGCggCugGgCUGCugCCCCCg -3'
miRNA:   3'- -UGGAAGGUGg-GugCaGGUGugGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 109663 0.68 0.633193
Target:  5'- uGCC--CCAUUCAUG-CUACGCCCCCUc -3'
miRNA:   3'- -UGGaaGGUGGGUGCaGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 115492 0.68 0.622287
Target:  5'- cCCUggCCACCauCGCGgcCCGCugcagcgGCCCCCCg -3'
miRNA:   3'- uGGAa-GGUGG--GUGCa-GGUG-------UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 140301 0.69 0.613371
Target:  5'- gGCgCguaCGgCCACGUCCACaacgGCUCCCCg -3'
miRNA:   3'- -UG-GaagGUgGGUGCAGGUG----UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 143189 0.69 0.61238
Target:  5'- cGCCUUCaua-CACGUCCGCACgagggcgCCCUCg -3'
miRNA:   3'- -UGGAAGguggGUGCAGGUGUG-------GGGGG- -5'
2723 5' -59.8 NC_001491.2 + 57951 0.69 0.582771
Target:  5'- uGCCggCCACCCugGcucuggCCGCuucagacauguugGCCCCuCCg -3'
miRNA:   3'- -UGGaaGGUGGGugCa-----GGUG-------------UGGGG-GG- -5'
2723 5' -59.8 NC_001491.2 + 36942 0.69 0.573938
Target:  5'- gACUUgcuaCCGgCCACaGUCCAgGCCCgCCCu -3'
miRNA:   3'- -UGGAa---GGUgGGUG-CAGGUgUGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 96838 0.69 0.573938
Target:  5'- uCCUUCCGCaa--GUUuuuaacccgCACACCCCCCg -3'
miRNA:   3'- uGGAAGGUGggugCAG---------GUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 2513 0.69 0.563187
Target:  5'- gGCCUggcagggUCCgGCCCGCGUCa--GCCCCUa -3'
miRNA:   3'- -UGGA-------AGG-UGGGUGCAGgugUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 150224 0.7 0.55443
Target:  5'- -CCc-CCAgCCCGCGUCU-CACCCCCg -3'
miRNA:   3'- uGGaaGGU-GGGUGCAGGuGUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 139696 0.7 0.55443
Target:  5'- uACCUgCgCGCCCGCGgCCGCaaGCUCCCUc -3'
miRNA:   3'- -UGGAaG-GUGGGUGCaGGUG--UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 121991 0.7 0.55443
Target:  5'- gACUcgucgCCGCUCACGUCaCACuCCuCCCCa -3'
miRNA:   3'- -UGGaa---GGUGGGUGCAG-GUGuGG-GGGG- -5'
2723 5' -59.8 NC_001491.2 + 118329 0.7 0.544748
Target:  5'- uGCCgcCCAgCCgGCGUCCccgGCACCCagCCCg -3'
miRNA:   3'- -UGGaaGGU-GGgUGCAGG---UGUGGG--GGG- -5'
2723 5' -59.8 NC_001491.2 + 26053 0.7 0.544748
Target:  5'- aACCgauguacaCACCCACGcCUACAUaccaCCCCCa -3'
miRNA:   3'- -UGGaag-----GUGGGUGCaGGUGUG----GGGGG- -5'
2723 5' -59.8 NC_001491.2 + 99025 0.7 0.525555
Target:  5'- cGCCggCUACCaGCuGUUCGCagGCCCCCCg -3'
miRNA:   3'- -UGGaaGGUGGgUG-CAGGUG--UGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.