miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 3' -61.7 NC_005832.1 + 65481 0.69 0.448914
Target:  5'- gGGCCcucacGUCCCCGUgGUGUCCaugugcucCGGuCCc -3'
miRNA:   3'- -UCGG-----CAGGGGCAgCGCAGGa-------GCCuGG- -5'
27230 3' -61.7 NC_005832.1 + 36331 0.69 0.431399
Target:  5'- uGCCG-CCgCGUcCGCGUCUUUauccaGGGCCg -3'
miRNA:   3'- uCGGCaGGgGCA-GCGCAGGAG-----CCUGG- -5'
27230 3' -61.7 NC_005832.1 + 2290 0.7 0.381359
Target:  5'- uGGCCGUCUCCaaCGcCGUCa--GGACCa -3'
miRNA:   3'- -UCGGCAGGGGcaGC-GCAGgagCCUGG- -5'
27230 3' -61.7 NC_005832.1 + 54284 0.71 0.342723
Target:  5'- aAGCCGgaCCCGUcaCGUacagGUCCUCGGGCa -3'
miRNA:   3'- -UCGGCagGGGCA--GCG----CAGGAGCCUGg -5'
27230 3' -61.7 NC_005832.1 + 50502 0.71 0.328079
Target:  5'- cAGCCacUCUCCGccUC-CGUCCUCGGACUc -3'
miRNA:   3'- -UCGGc-AGGGGC--AGcGCAGGAGCCUGG- -5'
27230 3' -61.7 NC_005832.1 + 20128 0.72 0.27418
Target:  5'- uGuuGUCCCUGgugggaGCGaUCCUCaGGACCg -3'
miRNA:   3'- uCggCAGGGGCag----CGC-AGGAG-CCUGG- -5'
27230 3' -61.7 NC_005832.1 + 90399 0.74 0.217064
Target:  5'- gGGCCcUCCUCGacaGCuuGUCCUCGGGCCu -3'
miRNA:   3'- -UCGGcAGGGGCag-CG--CAGGAGCCUGG- -5'
27230 3' -61.7 NC_005832.1 + 65534 0.74 0.204964
Target:  5'- uAGCCGUCCCCaccuacgagugcaUCGCucacgccuacacGUCCUCGGGCa -3'
miRNA:   3'- -UCGGCAGGGGc------------AGCG------------CAGGAGCCUGg -5'
27230 3' -61.7 NC_005832.1 + 54797 0.75 0.178987
Target:  5'- cAGgCGUCCCUGUCccacuCGUCCUUGGAgCCg -3'
miRNA:   3'- -UCgGCAGGGGCAGc----GCAGGAGCCU-GG- -5'
27230 3' -61.7 NC_005832.1 + 92424 1.1 0.000631
Target:  5'- gAGCCGUCCCCGUCGCGUCCUCGGACCc -3'
miRNA:   3'- -UCGGCAGGGGCAGCGCAGGAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.