miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27230 5' -57 NC_005832.1 + 90542 0.67 0.749261
Target:  5'- gGGACGGgaggccCGAGGAcaagcuguCGAgGAGGGCCc- -3'
miRNA:   3'- aCCUGCU------GCUCCU--------GCUgCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 2649 0.68 0.729708
Target:  5'- aGGAC-ACGAGGcCGuCGGGGGCUc- -3'
miRNA:   3'- aCCUGcUGCUCCuGCuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 63838 0.68 0.729708
Target:  5'- gGGcuACGugGAuuuGGACGAC-AGGGCCGu -3'
miRNA:   3'- aCC--UGCugCU---CCUGCUGcUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 10551 0.68 0.729708
Target:  5'- -aGGCGAacgucuugGGGGAUGACGAGGccacccucACCAGg -3'
miRNA:   3'- acCUGCUg-------CUCCUGCUGCUCC--------UGGUC- -5'
27230 5' -57 NC_005832.1 + 56461 0.68 0.729708
Target:  5'- -uGACGAUGAGcGugG-UGAGGuCCAGg -3'
miRNA:   3'- acCUGCUGCUC-CugCuGCUCCuGGUC- -5'
27230 5' -57 NC_005832.1 + 32166 0.68 0.728721
Target:  5'- aGGAgCGGCGAGGggaguccACGGCauGGGGuCCGGa -3'
miRNA:   3'- aCCU-GCUGCUCC-------UGCUG--CUCCuGGUC- -5'
27230 5' -57 NC_005832.1 + 39332 0.68 0.7198
Target:  5'- -uGACccccccCGGGGACGACGGcGACCAGg -3'
miRNA:   3'- acCUGcu----GCUCCUGCUGCUcCUGGUC- -5'
27230 5' -57 NC_005832.1 + 66868 0.68 0.709816
Target:  5'- aGGGgGuCGGGaACGACGAGGAuaguguCCAGg -3'
miRNA:   3'- aCCUgCuGCUCcUGCUGCUCCU------GGUC- -5'
27230 5' -57 NC_005832.1 + 2722 0.68 0.709816
Target:  5'- cGGAUG-CGgaaaAGGACGucAUGAGGGCCAc -3'
miRNA:   3'- aCCUGCuGC----UCCUGC--UGCUCCUGGUc -5'
27230 5' -57 NC_005832.1 + 48401 0.68 0.709816
Target:  5'- gGGACG-UGAGGGuCGAaaaGAGGGUCAGg -3'
miRNA:   3'- aCCUGCuGCUCCU-GCUg--CUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 90812 0.68 0.709816
Target:  5'- aGGACGACGAagagaacucgGcGACaGACGAGGAUg-- -3'
miRNA:   3'- aCCUGCUGCU----------C-CUG-CUGCUCCUGguc -5'
27230 5' -57 NC_005832.1 + 19956 0.68 0.709816
Target:  5'- gUGGGCGugGAuGGACu-UGAGGAUCu- -3'
miRNA:   3'- -ACCUGCugCU-CCUGcuGCUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 96594 0.68 0.703793
Target:  5'- gGGAUGACGcagucaggguaaagaGGGAgGugGAGaGcACCAGg -3'
miRNA:   3'- aCCUGCUGC---------------UCCUgCugCUC-C-UGGUC- -5'
27230 5' -57 NC_005832.1 + 75116 0.68 0.699766
Target:  5'- cGGGCcACuGGGACGACGugagGGGAcCCAGc -3'
miRNA:   3'- aCCUGcUGcUCCUGCUGC----UCCU-GGUC- -5'
27230 5' -57 NC_005832.1 + 92042 0.68 0.689658
Target:  5'- cUGGACuuuGACGuGGugGACaAGGACUg- -3'
miRNA:   3'- -ACCUG---CUGCuCCugCUGcUCCUGGuc -5'
27230 5' -57 NC_005832.1 + 88168 0.69 0.659083
Target:  5'- -aGAUGACaGGGGCGAaGAGGACgGGg -3'
miRNA:   3'- acCUGCUGcUCCUGCUgCUCCUGgUC- -5'
27230 5' -57 NC_005832.1 + 80773 0.69 0.659083
Target:  5'- cGGACcaaGAGGGguugggGAUGAGGACCGGg -3'
miRNA:   3'- aCCUGcugCUCCUg-----CUGCUCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 63244 0.69 0.659083
Target:  5'- aGGAgGAgGAGGAgGAgGcGGAUCAGu -3'
miRNA:   3'- aCCUgCUgCUCCUgCUgCuCCUGGUC- -5'
27230 5' -57 NC_005832.1 + 9307 0.69 0.638576
Target:  5'- cGGugGGCagGAGGuGCGugGAcugGGAUCAGa -3'
miRNA:   3'- aCCugCUG--CUCC-UGCugCU---CCUGGUC- -5'
27230 5' -57 NC_005832.1 + 1961 0.7 0.628311
Target:  5'- aGGugGAC-AGGGCGAUggGAGGGUCGGa -3'
miRNA:   3'- aCCugCUGcUCCUGCUG--CUCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.