Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27231 | 3' | -61 | NC_005832.1 | + | 3948 | 0.67 | 0.527022 |
Target: 5'- cGUGcgu-CCuGGUUGGGAuGGCCCUCa -3' miRNA: 3'- -CACuuucGGcCCGACCCU-CCGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 8230 | 0.67 | 0.517176 |
Target: 5'- cGUGAGAGCCGGuacgGGGuacaugGGGCUCUUg -3' miRNA: 3'- -CACUUUCGGCCcga-CCC------UCCGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 29634 | 0.68 | 0.458893 |
Target: 5'- -gGGAGGCUauauccaGGGgaGGGAcGGCUCUCUc -3' miRNA: 3'- caCUUUCGG-------CCCgaCCCU-CCGGGAGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 39446 | 0.66 | 0.543917 |
Target: 5'- cGUGGGagcGGCUGGGCcucagGGGcagaggggaaucagGGGUCCUCa -3' miRNA: 3'- -CACUU---UCGGCCCGa----CCC--------------UCCGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 42306 | 0.66 | 0.57718 |
Target: 5'- -gGGAGGCCGuGGCcaugugUGGGcugGGGUCCUUUu -3' miRNA: 3'- caCUUUCGGC-CCG------ACCC---UCCGGGAGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 43142 | 0.66 | 0.540922 |
Target: 5'- -gGGAGGCCGugcuggccaccgucaGGCUGGGAaagGGCCUg-- -3' miRNA: 3'- caCUUUCGGC---------------CCGACCCU---CCGGGaga -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 43324 | 0.68 | 0.469154 |
Target: 5'- -cGccAGCCuGGC-GGGAGcGCCCUCa -3' miRNA: 3'- caCuuUCGGcCCGaCCCUC-CGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 55743 | 0.67 | 0.507404 |
Target: 5'- uGUGGGAGCgGgaguGGCUGGGGcGGCgcugaccgCCUCUg -3' miRNA: 3'- -CACUUUCGgC----CCGACCCU-CCG--------GGAGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 61926 | 0.67 | 0.507404 |
Target: 5'- -aGGAGGCCguuuGGGUUGuGGuGGCCgUCg -3' miRNA: 3'- caCUUUCGG----CCCGAC-CCuCCGGgAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 64128 | 0.71 | 0.297037 |
Target: 5'- -aGGGAGCCGGGUaucaGGGCCCUCa -3' miRNA: 3'- caCUUUCGGCCCGacccUCCGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 65883 | 0.67 | 0.48906 |
Target: 5'- gGUGAugcccacguccgccAGGUCGGGCcuggacauggauaucUGGaGGGCCCUCa -3' miRNA: 3'- -CACU--------------UUCGGCCCG---------------ACCcUCCGGGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 67076 | 0.66 | 0.57718 |
Target: 5'- cUGGAcGCCGaGGCccuGGAGGCCaCUCc -3' miRNA: 3'- cACUUuCGGC-CCGac-CCUCCGG-GAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 67904 | 0.67 | 0.488103 |
Target: 5'- -gGAGGGCCGGGgucuCUGGG-GGaaaaCCUCc -3' miRNA: 3'- caCUUUCGGCCC----GACCCuCCg---GGAGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 70863 | 0.68 | 0.459821 |
Target: 5'- cUGGcuauAGCCGcGGCUGcGGcGGCCuCUCUg -3' miRNA: 3'- cACUu---UCGGC-CCGAC-CCuCCGG-GAGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 75644 | 0.77 | 0.121085 |
Target: 5'- uUGAGGGCCGGGU--GGAGGCCC-CUg -3' miRNA: 3'- cACUUUCGGCCCGacCCUCCGGGaGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 94192 | 1.07 | 0.000826 |
Target: 5'- cGUGAAAGCCGGGCUGGGAGGCCCUCUu -3' miRNA: 3'- -CACUUUCGGCCCGACCCUCCGGGAGA- -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 101881 | 0.66 | 0.567044 |
Target: 5'- uUGAGGGCCGGGaaGGGcuuGGaCCC-Ca -3' miRNA: 3'- cACUUUCGGCCCgaCCCu--CC-GGGaGa -5' |
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27231 | 3' | -61 | NC_005832.1 | + | 102076 | 0.68 | 0.450588 |
Target: 5'- uUGGccuuGGCCaGGGuCUGGGcGGuCCCUCUa -3' miRNA: 3'- cACUu---UCGG-CCC-GACCCuCC-GGGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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