miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27231 5' -54.3 NC_005832.1 + 54863 0.67 0.841903
Target:  5'- cACAGGccGGUCCUCuCGCAggcgucgaaccccGUCC-CCACc -3'
miRNA:   3'- -UGUUU--CCAGGAGuGCGU-------------CAGGuGGUG- -5'
27231 5' -54.3 NC_005832.1 + 75256 0.67 0.842749
Target:  5'- uGCGcuGGGUCCccUCACGUcgucccaguGGcCCGCCACu -3'
miRNA:   3'- -UGUu-UCCAGG--AGUGCG---------UCaGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 72734 0.67 0.867132
Target:  5'- ----cGGaccCUUCACGCcGUCCACUACg -3'
miRNA:   3'- uguuuCCa--GGAGUGCGuCAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 10183 0.69 0.728924
Target:  5'- -gAGAGGaUCCUCAUGacuUCCGCCGCc -3'
miRNA:   3'- ugUUUCC-AGGAGUGCgucAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 94901 0.69 0.718599
Target:  5'- cGCGucGGcCCUCGCGCAGaUCCuCCu- -3'
miRNA:   3'- -UGUuuCCaGGAGUGCGUC-AGGuGGug -5'
27231 5' -54.3 NC_005832.1 + 36385 0.7 0.707148
Target:  5'- cGCGAGGGUCCUCuccaaguACGgccucaaGGUCCGCgACc -3'
miRNA:   3'- -UGUUUCCAGGAG-------UGCg------UCAGGUGgUG- -5'
27231 5' -54.3 NC_005832.1 + 71408 0.7 0.695614
Target:  5'- uGCuuGGGUCCaccgacauuggcCACGCAGacaCCGCCGCg -3'
miRNA:   3'- -UGuuUCCAGGa-----------GUGCGUCa--GGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 92592 0.71 0.654247
Target:  5'- gACu--GGUCCUCGucguccuCGUcGUCCACCACc -3'
miRNA:   3'- -UGuuuCCAGGAGU-------GCGuCAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 104267 0.71 0.633952
Target:  5'- -gAAAGGUCCUgACGguGUaCCugCAg -3'
miRNA:   3'- ugUUUCCAGGAgUGCguCA-GGugGUg -5'
27231 5' -54.3 NC_005832.1 + 74397 0.71 0.612584
Target:  5'- -aAAAGGUCCUCAgGguGggucUCCAgCACa -3'
miRNA:   3'- ugUUUCCAGGAGUgCguC----AGGUgGUG- -5'
27231 5' -54.3 NC_005832.1 + 675 0.72 0.580671
Target:  5'- aGCAGGGuGUCCUCggACGCGGaccCCGCCGg -3'
miRNA:   3'- -UGUUUC-CAGGAG--UGCGUCa--GGUGGUg -5'
27231 5' -54.3 NC_005832.1 + 26445 0.73 0.528381
Target:  5'- gGCAGAGGUUCggaacugCGacaGCAGUCC-CCACu -3'
miRNA:   3'- -UGUUUCCAGGa------GUg--CGUCAGGuGGUG- -5'
27231 5' -54.3 NC_005832.1 + 54737 0.66 0.9057
Target:  5'- cUAGAGGacagcgucucggcuaUCCUCuugACGUGGUCCACCc- -3'
miRNA:   3'- uGUUUCC---------------AGGAG---UGCGUCAGGUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.