miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27232 3' -53.9 NC_005832.1 + 49064 0.66 0.89415
Target:  5'- cGAC-GUCcucgCGUUGCCaGAGACGgaCg -3'
miRNA:   3'- aCUGaCAGa---GUAACGGcCUCUGCgaG- -5'
27232 3' -53.9 NC_005832.1 + 15800 0.67 0.879821
Target:  5'- aGGCUcUCUUGaagcUGCCGGgagAGGCGCUCc -3'
miRNA:   3'- aCUGAcAGAGUa---ACGGCC---UCUGCGAG- -5'
27232 3' -53.9 NC_005832.1 + 84448 0.67 0.872293
Target:  5'- gGACUuugagguugcaaGUCUCuUUGCUGGAGAcuCGCa- -3'
miRNA:   3'- aCUGA------------CAGAGuAACGGCCUCU--GCGag -5'
27232 3' -53.9 NC_005832.1 + 5979 0.67 0.864528
Target:  5'- cUGAUUGUCU---UGCCGGGGAgcCUCu -3'
miRNA:   3'- -ACUGACAGAguaACGGCCUCUgcGAG- -5'
27232 3' -53.9 NC_005832.1 + 15628 0.67 0.84832
Target:  5'- aGACUcugCUCggUGUCGGAGcagacgauGCGCUCc -3'
miRNA:   3'- aCUGAca-GAGuaACGGCCUC--------UGCGAG- -5'
27232 3' -53.9 NC_005832.1 + 10975 0.67 0.84832
Target:  5'- cGACgcggGUCUgAccuUUGCCGGGGAggUGCUg -3'
miRNA:   3'- aCUGa---CAGAgU---AACGGCCUCU--GCGAg -5'
27232 3' -53.9 NC_005832.1 + 56724 0.69 0.794819
Target:  5'- aGcCUGUCUaUGUUGuuGGAGACGUa- -3'
miRNA:   3'- aCuGACAGA-GUAACggCCUCUGCGag -5'
27232 3' -53.9 NC_005832.1 + 83446 0.69 0.765773
Target:  5'- -uGCUGUCUCcuuuUUGCCGGuGACcuuCUCu -3'
miRNA:   3'- acUGACAGAGu---AACGGCCuCUGc--GAG- -5'
27232 3' -53.9 NC_005832.1 + 84104 0.69 0.765773
Target:  5'- aGAUUGUCUguUcuUGCCgGGAGAUgagGCUCu -3'
miRNA:   3'- aCUGACAGAguA--ACGG-CCUCUG---CGAG- -5'
27232 3' -53.9 NC_005832.1 + 35247 0.69 0.765773
Target:  5'- aGGCUGguUCUCuUUGCgGGAGACGg-- -3'
miRNA:   3'- aCUGAC--AGAGuAACGgCCUCUGCgag -5'
27232 3' -53.9 NC_005832.1 + 47562 0.69 0.745743
Target:  5'- aGGCUGgacUUUGUgGCCGG-GACGCUCc -3'
miRNA:   3'- aCUGACa--GAGUAaCGGCCuCUGCGAG- -5'
27232 3' -53.9 NC_005832.1 + 4869 0.72 0.587318
Target:  5'- aGGCcG-CUCGUgagGCUGGuAGACGCUCa -3'
miRNA:   3'- aCUGaCaGAGUAa--CGGCC-UCUGCGAG- -5'
27232 3' -53.9 NC_005832.1 + 95586 1.1 0.002476
Target:  5'- gUGACUGUCUCAUUGCCGGAGACGCUCu -3'
miRNA:   3'- -ACUGACAGAGUAACGGCCUCUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.