miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27232 5' -50.9 NC_005832.1 + 87590 0.66 0.976262
Target:  5'- uGGAGACGa---GGUGGGAGACGU-Cg -3'
miRNA:   3'- -CCUUUGCgagaCCGUCCUCUGUAaGa -5'
27232 5' -50.9 NC_005832.1 + 67789 0.66 0.97057
Target:  5'- cGAAccCGCUUUGGCGGGuc-CAUUCUc -3'
miRNA:   3'- cCUUu-GCGAGACCGUCCucuGUAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69476 0.67 0.967383
Target:  5'- cGGAGAC-CUa--GCAGGAGACuUUCUc -3'
miRNA:   3'- -CCUUUGcGAgacCGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69524 0.67 0.967383
Target:  5'- cGGAGAC-CUa--GCAGGAGACuUUCUc -3'
miRNA:   3'- -CCUUUGcGAgacCGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69572 0.67 0.967383
Target:  5'- cGGAGAC-CUa--GCAGGAGACuUUCUc -3'
miRNA:   3'- -CCUUUGcGAgacCGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 42501 0.67 0.963605
Target:  5'- aGGAGggccgccAUGCUCUGGUGGuGGACcgUCc -3'
miRNA:   3'- -CCUU-------UGCGAGACCGUCcUCUGuaAGa -5'
27232 5' -50.9 NC_005832.1 + 105646 0.68 0.947775
Target:  5'- aGGAGAUaCUCUuGUAGGAGAUAcUCUc -3'
miRNA:   3'- -CCUUUGcGAGAcCGUCCUCUGUaAGA- -5'
27232 5' -50.9 NC_005832.1 + 69632 0.68 0.94308
Target:  5'- aGGAGACuuUCUcccaGCGGGAGACuUUCUu -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69710 0.68 0.94308
Target:  5'- aGGAGACuuUCUcccaGCGGGAGACuUUCUu -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69788 0.68 0.94308
Target:  5'- aGGAGACuuUCUcccaGCGGGAGACuUUCUu -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 22199 0.68 0.938119
Target:  5'- cGGAAACGUUCgGGacaagaAGGAGAUGUa-- -3'
miRNA:   3'- -CCUUUGCGAGaCCg-----UCCUCUGUAaga -5'
27232 5' -50.9 NC_005832.1 + 69662 0.69 0.92162
Target:  5'- uGGAGACuuUCUcacaGCGGGAGACuUUCUa -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69740 0.69 0.92162
Target:  5'- uGGAGACuuUCUcacaGCGGGAGACuUUCUa -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 69830 0.69 0.92162
Target:  5'- uGGAGACuuUCUcacaGCGGGAGACuUUCUa -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 70046 0.69 0.92162
Target:  5'- uGGAGACuuUCUcacaGCGGGAGACuUUCUa -3'
miRNA:   3'- -CCUUUGcgAGAc---CGUCCUCUGuAAGA- -5'
27232 5' -50.9 NC_005832.1 + 12617 0.71 0.823268
Target:  5'- gGGAGAUacuCUCUGGCGGG-GACAUg-- -3'
miRNA:   3'- -CCUUUGc--GAGACCGUCCuCUGUAaga -5'
27232 5' -50.9 NC_005832.1 + 98115 0.72 0.765709
Target:  5'- aGGAAACGCUUUGGgggaugcuuCGGGGGAacgUCUg -3'
miRNA:   3'- -CCUUUGCGAGACC---------GUCCUCUguaAGA- -5'
27232 5' -50.9 NC_005832.1 + 95620 1.1 0.005083
Target:  5'- uGGAAACGCUCUGGCAGGAGACAUUCUc -3'
miRNA:   3'- -CCUUUGCGAGACCGUCCUCUGUAAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.