miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 3' -59.1 NC_005832.1 + 32410 0.66 0.661974
Target:  5'- cGAGUgucccguggCGACuGGCUCC-GGGGCccuaaAGGCc -3'
miRNA:   3'- -UUCGa--------GCUGuCCGAGGaCCUCG-----UCCG- -5'
27233 3' -59.1 NC_005832.1 + 10338 0.66 0.651544
Target:  5'- cGGGUUCccauGACAGGCUCaaggccaggGGAG-AGGCg -3'
miRNA:   3'- -UUCGAG----CUGUCCGAGga-------CCUCgUCCG- -5'
27233 3' -59.1 NC_005832.1 + 56135 0.66 0.641098
Target:  5'- aAAGUaCGAgAGcGuCUCCUGGAGCuugacGGCc -3'
miRNA:   3'- -UUCGaGCUgUC-C-GAGGACCUCGu----CCG- -5'
27233 3' -59.1 NC_005832.1 + 80063 0.66 0.620192
Target:  5'- cGGGCUCcACGuacaGCUCCUGcGcGCAGGCc -3'
miRNA:   3'- -UUCGAGcUGUc---CGAGGAC-CuCGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 86245 0.67 0.609749
Target:  5'- -uGCUCuuCAGGCUCCUGcucAGCcuccuuAGGCu -3'
miRNA:   3'- uuCGAGcuGUCCGAGGACc--UCG------UCCG- -5'
27233 3' -59.1 NC_005832.1 + 53581 0.67 0.599323
Target:  5'- -uGUUCcaugGACcccgcgGGGUUCgaGGAGCAGGCg -3'
miRNA:   3'- uuCGAG----CUG------UCCGAGgaCCUCGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 31314 0.67 0.588923
Target:  5'- cAGUagGAUccugGGGCUC--GGAGCAGGCa -3'
miRNA:   3'- uUCGagCUG----UCCGAGgaCCUCGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 99726 0.67 0.578556
Target:  5'- cAGCaagUCGGCcauGGCUCCguuUGGGGcCAGGUc -3'
miRNA:   3'- uUCG---AGCUGu--CCGAGG---ACCUC-GUCCG- -5'
27233 3' -59.1 NC_005832.1 + 55107 0.67 0.568228
Target:  5'- uGGC-CGuCGGGUUCgaGGcGCAGGCc -3'
miRNA:   3'- uUCGaGCuGUCCGAGgaCCuCGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 9530 0.67 0.568228
Target:  5'- cAGgaUGGCAGucgcuacCUCCUGGGGCAuGGCa -3'
miRNA:   3'- uUCgaGCUGUCc------GAGGACCUCGU-CCG- -5'
27233 3' -59.1 NC_005832.1 + 85696 0.67 0.557947
Target:  5'- aAAGCUgGACgAGGCUacagGaGAGCAGGUc -3'
miRNA:   3'- -UUCGAgCUG-UCCGAgga-C-CUCGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 80657 0.68 0.54772
Target:  5'- uAGCcCGACGGGaCgaaCCUGGAGCccAGGa -3'
miRNA:   3'- uUCGaGCUGUCC-Ga--GGACCUCG--UCCg -5'
27233 3' -59.1 NC_005832.1 + 68940 0.68 0.546701
Target:  5'- --uCUCGACGGGCcaUCC-GGAGCccgcuaaaaaguaGGGCa -3'
miRNA:   3'- uucGAGCUGUCCG--AGGaCCUCG-------------UCCG- -5'
27233 3' -59.1 NC_005832.1 + 10118 0.68 0.537553
Target:  5'- aGAGUUUGAC-GGCUCCagGGAGUgcgaguacgggAGGUg -3'
miRNA:   3'- -UUCGAGCUGuCCGAGGa-CCUCG-----------UCCG- -5'
27233 3' -59.1 NC_005832.1 + 40796 0.68 0.531484
Target:  5'- -uGCUCGAgAGGUacgagucuccucccgUUCUGGAGguGGa -3'
miRNA:   3'- uuCGAGCUgUCCG---------------AGGACCUCguCCg -5'
27233 3' -59.1 NC_005832.1 + 53979 0.68 0.527451
Target:  5'- cGGCuUCGGCAagaccuucauGGC-CCUGGAGCuguggaggAGGCu -3'
miRNA:   3'- uUCG-AGCUGU----------CCGaGGACCUCG--------UCCG- -5'
27233 3' -59.1 NC_005832.1 + 78116 0.68 0.517422
Target:  5'- uAGCUCuccCAGGUUCCUGGccuggaacccAGuCAGGCc -3'
miRNA:   3'- uUCGAGcu-GUCCGAGGACC----------UC-GUCCG- -5'
27233 3' -59.1 NC_005832.1 + 46662 0.68 0.516423
Target:  5'- ----gUGGCGGGCUCCaGGAaugccaggcgccuGCAGGCg -3'
miRNA:   3'- uucgaGCUGUCCGAGGaCCU-------------CGUCCG- -5'
27233 3' -59.1 NC_005832.1 + 46095 0.68 0.507469
Target:  5'- cAAGCagG-UGGGUUCCUGGuGCAGGg -3'
miRNA:   3'- -UUCGagCuGUCCGAGGACCuCGUCCg -5'
27233 3' -59.1 NC_005832.1 + 4991 0.68 0.506478
Target:  5'- aGGGaCUCugacgugGACAGGgUCCUGG-GCAGGg -3'
miRNA:   3'- -UUC-GAG-------CUGUCCgAGGACCuCGUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.