miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 53321 0.67 0.986059
Target:  5'- -gGCCUACagGGCCAu--GGAuuuCGAgCCc -3'
miRNA:   3'- gaCGGAUGa-CCGGUuuuUCUu--GCU-GG- -5'
27233 5' -49 NC_005832.1 + 53584 0.68 0.97741
Target:  5'- -gGUCUACaGGCuCAuAGAGAGCaACCa -3'
miRNA:   3'- gaCGGAUGaCCG-GUuUUUCUUGcUGG- -5'
27233 5' -49 NC_005832.1 + 54557 0.67 0.983788
Target:  5'- -gGCCcgacguaaagugGCUGGUguugugCAAGAGGGugGACCa -3'
miRNA:   3'- gaCGGa-----------UGACCG------GUUUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 54792 0.67 0.984184
Target:  5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3'
miRNA:   3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 56402 0.68 0.970923
Target:  5'- cCU-CCUGCcGGCCAGGAaccccacucccacgGGAGCGcCCa -3'
miRNA:   3'- -GAcGGAUGaCCGGUUUU--------------UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 56750 0.67 0.987758
Target:  5'- -gGCgUACUGcGCCAGGuuuAGGccagacaccGCGGCCu -3'
miRNA:   3'- gaCGgAUGAC-CGGUUUu--UCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 65337 0.67 0.987758
Target:  5'- -gGcCCUGCaGGaCGAGAGGGACGugCc -3'
miRNA:   3'- gaC-GGAUGaCCgGUUUUUCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 65634 0.66 0.995619
Target:  5'- cCUGCCggcCUGGaaggaCAGGAAGGcccUGGCCg -3'
miRNA:   3'- -GACGGau-GACCg----GUUUUUCUu--GCUGG- -5'
27233 5' -49 NC_005832.1 + 65797 0.66 0.994857
Target:  5'- -cGCCcgUGCUGGaucCCcuGAAGA-CGGCCa -3'
miRNA:   3'- gaCGG--AUGACC---GGuuUUUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 66969 0.66 0.994857
Target:  5'- gCUGCCUGgUGucuuGCauccucAGGACGGCCa -3'
miRNA:   3'- -GACGGAUgAC----CGguuuu-UCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 67949 0.68 0.971838
Target:  5'- -gGCCagagUACgGGCa--GAGGAGCGACCc -3'
miRNA:   3'- gaCGG----AUGaCCGguuUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 71269 0.76 0.7137
Target:  5'- gUGUCUGCgUGGCCAAugucGGugGACCc -3'
miRNA:   3'- gACGGAUG-ACCGGUUuuu-CUugCUGG- -5'
27233 5' -49 NC_005832.1 + 71671 0.68 0.97987
Target:  5'- aCUGCCacgACUgcagacagGGCCAc-GAGGGCGGCg -3'
miRNA:   3'- -GACGGa--UGA--------CCGGUuuUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 74329 0.7 0.949326
Target:  5'- -aGCCUcgUGGCCAGccucuuGCGACCg -3'
miRNA:   3'- gaCGGAugACCGGUUuuucu-UGCUGG- -5'
27233 5' -49 NC_005832.1 + 74892 0.66 0.994775
Target:  5'- -gGCC--CUGGCCGAAAAGuacAGCGgaugcaaGCCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUC---UUGC-------UGG- -5'
27233 5' -49 NC_005832.1 + 75199 0.73 0.833363
Target:  5'- uCUGCCUACUGGCagggcaagguCAGGAGGGgauccuACG-CCg -3'
miRNA:   3'- -GACGGAUGACCG----------GUUUUUCU------UGCuGG- -5'
27233 5' -49 NC_005832.1 + 75714 0.66 0.995619
Target:  5'- cCUGUCUGC-GGCCGu-GGGGAgGugUa -3'
miRNA:   3'- -GACGGAUGaCCGGUuuUUCUUgCugG- -5'
27233 5' -49 NC_005832.1 + 75920 0.69 0.968382
Target:  5'- -gGCC--CUGGCCAAGGAGAGgGgagaggcACCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUCUUgC-------UGG- -5'
27233 5' -49 NC_005832.1 + 76395 0.67 0.98438
Target:  5'- -gGCCUcuacuacuugaggacCUGcGCCGGGAGGAcCGGCCa -3'
miRNA:   3'- gaCGGAu--------------GAC-CGGUUUUUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 78206 0.74 0.805608
Target:  5'- uCUGCUagg-GGCCGuagaggGAAAGGACGACCu -3'
miRNA:   3'- -GACGGaugaCCGGU------UUUUCUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.